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PDB Homolog: RPB4/YJL140W Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein RPB4/YJL140W. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2014-06-05

54 PDB homolog(s) found for yeast gene RPB4/YJL140W

RPB4/YJL140W links
  • Locus Info
  • PDB protein structure(s) homologous to RPB4Homolog Source (per PDB)Protein Alignment: RPB4 vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    1NT9 ( Chain: D)
    Complete 12-Subunit Rna Polymerase Ii
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    1Y1W ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BY7 ( Chain: D)
    Elongating Rna Polymerase Ii-bye1 Tld Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BY1 ( Chain: D)
    Elongating Rna Polymerase Ii-bye1 Tld Complex Soaked With Ampcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BXZ ( Chain: D)
    Rna Polymerase Ii-bye1 Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BXX ( Chain: D)
    Arrested Rna Polymerase Ii-bye1 Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BBS ( Chain: D)
    Structure Of An Initially Transcribing Rna Polymerase Ii- Tfiib Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4BBR ( Chain: D)
    Structure Of Rna Polymerase Ii-tfiib Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A93 ( Chain: D)
    Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3I ( Chain: D)
    Rna Polymerase Ii Binary Complex With Dna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3G ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 2nt Dna-rna Hybrid
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3M ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 4nt Dna-Rna Hybrid And Soaked With Ampcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3L ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 7nt Dna-Rna Hybrid And Soaked With Ampcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    1Y77 ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex With Substrate Analogue Gmpcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    1Y1V ( Chain: D)
    Refined Rna Polymerase Ii-tfiis Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    1Y1Y ( Chain: D)
    Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2B63 ( Chain: D)
    Complete Rna Polymerase Ii-Rna Inhibitor Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2B8K ( Chain: D)
    12-Subunit Rna Polymerase Ii
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2JA5 ( Chain: D)
    Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2JA6 ( Chain: D)
    Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2JA7 ( Chain: D, P)
    Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain D = 1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    Chain P = 1.2e-1121000View alignment
    2JA8 ( Chain: D)
    Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2R7Z ( Chain: D)
    Cisplatin Lesion Containing Rna Polymerase Ii Elongation Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2R92 ( Chain: D)
    Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp Scaffold
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2R93 ( Chain: D)
    Elongation Complex Of Rna Polymerase Ii With A Hepatitis Delta Virus-Derived Rna Stem Loop
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    2VUM ( Chain: D)
    Alpha-Amanitin Inhibited Complete Rna Polymerase Ii Elongation Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3FKI ( Chain: D)
    12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3H3V ( Chain: E)
    Yeast Rnap Ii Containing Poly(a)-signal Sequence In The Active Site
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3HOU ( Chain: D, P)
    Complete Rna Polymerase Ii Elongation Complex I With A T-U Mismatch
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain D = 1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    Chain P = 1.2e-1121000View alignment
    3HOV ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex Ii
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3HOW ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex Iii With A T-U Mismatch And A Frayed Rna 3'-Uridine
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3HOX ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex V
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3HOY ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex Vi
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3HOZ ( Chain: D)
    Complete Rna Polymerase Ii Elongation Complex Iv With A T-U Mismatch And A Frayed Rna 3'-Guanine
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3I4M ( Chain: D)
    8-oxoguanine Containing Rna Polymerase Ii Elongation Complex D
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3I4N ( Chain: D)
    8-oxoguanine Containing Rna Polymerase Ii Elongation Complex E
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3K1F ( Chain: D)
    Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3PO2 ( Chain: D)
    Arrested Rna Polymerase Ii Elongation Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3PO3 ( Chain: D)
    Arrested Rna Polymerase Ii Reactivation Intermediate
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3J0K ( Chain: D)
    Orientation Of Rna Polymerase Ii Within The Human Vp16-Mediator-Pol Ii-Tfiif Assembly
  • PDB_Info
  • PDB_Structure
  • Homo sapiens1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3C ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 5nt Dna-Rna Hybrid
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3B ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 4nt Dna-Rna Hybrid
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3D ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 6nt Dna-Rna Hybrid
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3E ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 5nt Dna-Rna Hybrid And Soaked With Ampcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3F ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 6nt Dna-Rna Hybrid And Soaked With Ampcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3J ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 2nt Dna-Rna Hybrid And Soaked With Gmpcpp
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    4A3K ( Chain: D)
    Rna Polymerase Ii Initial Transcribing Complex With A 7nt Dna-Rna Hybrid
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-1121000View alignmentSCOP
    MMDB
    CATH
    3QT1 ( Chain: D)
    Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11 Subunit
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.8e-1111000View alignmentSCOP
    MMDB
    CATH
    3J1N ( Chain: D)
    Cryo-em Map Of A Yeast Minimal Preinitiation Complex Interacting With The Mediator Head Module
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae4.8e-1111000View alignmentSCOP
    MMDB
    CATH
    1Y14 ( Chain: A, C)
    Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain A = 4.7e-951000View alignmentSCOP
    MMDB
    CATH
    Chain C = 4.7e-951000View alignment
    1PQV ( Chain: D)
    Rna Polymerase Ii-Tfiis Complex
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.2e-93870View alignmentSCOP
    MMDB
    CATH
    1WCM ( Chain: D)
    Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae9.1e-78810View alignmentSCOP
    MMDB
    CATH
    3H0G ( Chain: D, P)
    Rna Polymerase Ii From Schizosaccharomyces Pombe
  • PDB_Info
  • PDB_Structure
  • Schizosaccharomyces pombe 972h-Chain D = 2.4e-134916View alignmentSCOP
    MMDB
    CATH
    Chain P = 2.4e-134916View alignment
    2C35 ( Chain: A, G, E, C)
    Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.2e-124524View alignmentSCOP
    MMDB
    CATH
    Chain G = 1.2e-124524View alignment
    Chain E = 1.2e-124524View alignment
    Chain C = 1.2e-124524View alignment

    Last updated on 2014-06-05