PDB Homolog: DOA4/YDR069C Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein DOA4/YDR069C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2016-09-15

28 PDB homolog(s) found for yeast gene DOA4/YDR069C

DOA4/YDR069C links
  • Locus Info
  • PDB protein structure(s) homologous to DOA4Homolog Source (per PDB)Protein Alignment: DOA4 vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    2Y6E ( Chain: A, B, C, D, E, F)
    Structure Of The D1d2 Domain Of Usp4, The Conserved Catalytic Domain
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.4e-513613View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.4e-513613View alignment
    Chain C = 1.4e-513613View alignment
    Chain D = 1.4e-513613View alignment
    Chain E = 1.4e-513613View alignment
    Chain F = 1.4e-513613View alignment
    3N3K ( Chain: A)
    The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor
  • PDB_Info
  • PDB_Structure
  • Homo sapiens2.5e-483616View alignmentSCOP
    MMDB
    CATH
    2GFO ( Chain: A)
    Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8
  • PDB_Info
  • PDB_Structure
  • Homo sapiens3.1e-473615View alignmentSCOP
    MMDB
    CATH
    3MTN ( Chain: C, A)
    Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain C = 2.8e-423319View alignmentSCOP
    MMDB
    CATH
    Chain A = 2.8e-423319View alignment
    3I3T ( Chain: G, E, C, A)
    Crystal Structure Of Covalent Ubiquitin-usp21 Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain G = 2.8e-423319View alignmentSCOP
    MMDB
    CATH
    Chain E = 2.8e-423319View alignment
    Chain C = 2.8e-423319View alignment
    Chain A = 2.8e-423319View alignment
    2Y5B ( Chain: E, A)
    Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain E = 2.8e-423319View alignmentSCOP
    MMDB
    CATH
    Chain A = 2.8e-423319View alignment
    3V6C ( Chain: A)
    Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin
  • PDB_Info
  • PDB_Structure
  • Homo sapiens2.6e-413515View alignmentSCOP
    MMDB
    CATH
    3V6E ( Chain: A)
    Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
  • PDB_Info
  • PDB_Structure
  • Homo sapiens2.6e-413515View alignmentSCOP
    MMDB
    CATH
    2HD5 ( Chain: A)
    Usp2 In Complex With Ubiquitin
  • PDB_Info
  • PDB_Structure
  • Homo sapiens2.6e-413515View alignmentSCOP
    MMDB
    CATH
    2IBI ( Chain: A)
    Covalent Ubiquitin-Usp2 Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiens2.0e-403415View alignmentSCOP
    MMDB
    CATH
    3NHE ( Chain: A)
    High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin
  • PDB_Info
  • PDB_Structure
  • Homo sapiens4.2e-403415View alignmentSCOP
    MMDB
    CATH
    4FIP ( Chain: E, A)
    Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain E = 8.6e-262918View alignmentSCOP
    MMDB
    CATH
    Chain A = 8.6e-262918View alignment
    4FK5 ( Chain: A)
    Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c8.6e-262918View alignmentSCOP
    MMDB
    CATH
    3M99 ( Chain: A)
    Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae3.1e-252918View alignmentSCOP
    MMDB
    CATH
    4W4U ( Chain: D, A)
    Structure Of Yeast Saga Dubm With Sgf73 Y57a Mutant At 2.8 Angstroms Resolution
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae CEN.PK113-7DChain D = 3.4e-252918View alignmentSCOP
    MMDB
    CATH
    Chain A = 3.4e-252918View alignment
    4WA6 ( Chain: A, D)
    Structure Of Yeast Saga Dubm With Sgf73 N59d Mutant At 2.36 Angstroms Resolution
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain A = 3.4e-252918View alignmentSCOP
    MMDB
    CATH
    Chain D = 3.4e-252918View alignment
    4FJC ( Chain: E, A)
    Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73 DUB Module
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain E = 3.4e-252918View alignmentSCOP
    MMDB
    CATH
    Chain A = 3.4e-252918View alignment
    3MHS ( Chain: A)
    Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND Ubiquitin Aldehyde
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae3.4e-252918View alignmentSCOP
    MMDB
    CATH
    3MHH ( Chain: A)
    Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae3.4e-252918View alignmentSCOP
    MMDB
    CATH
    4ZUX ( Chain: e, Z, U, j)
    Saga Dub Module Ubp8/sgf11/sus1/sgf73 Bound To Ubiqitinated Nucleosome
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain e = 3.6e-242918View alignmentSCOP
    MMDB
    CATH
    Chain Z = 3.6e-242918View alignment
    Chain U = 3.6e-242918View alignment
    Chain j = 3.6e-242918View alignment
    5K1A ( Chain: C, A, E, G)
    Crystal Structure Of The Uaf1-usp12 Complex In C2 Space Group
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain C = 1.8e-172816View alignmentSCOP
    MMDB
    CATH
    Chain A = 1.8e-172816View alignment
    Chain E = 1.8e-172816View alignment
    Chain G = 1.8e-172816View alignment
    5K16 ( Chain: A, B)
    Crystal Structure Of Free Ubiquitin-specific Protease 12
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 5.5e-172816View alignmentSCOP
    MMDB
    CATH
    Chain B = 5.5e-172816View alignment
    5K1C ( Chain: A)
    Crystal Structure Of The Uaf1/wdr20/usp12 Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiens5.5e-172816View alignmentSCOP
    MMDB
    CATH
    5K1B ( Chain: A)
    Crystal Structure Of The Uaf1/usp12 Complex In F222 Space Group
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.3e-172816View alignmentSCOP
    MMDB
    CATH
    5CVM ( Chain: A)
    Usp46~ubiquitin Bea Covalent Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiens3.5e-152714View alignmentSCOP
    MMDB
    CATH
    5CVO ( Chain: E, B)
    Wdr48:usp46~ubiquitin Ternary Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain E = 3.5e-152714View alignmentSCOP
    MMDB
    CATH
    Chain B = 3.5e-152714View alignment
    5CVN ( Chain: B)
    Wdr48 (2-580):usp46~ubiquitin Ternary Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiens3.5e-152714View alignmentSCOP
    MMDB
    CATH
    5CHT ( Chain: B, A)
    Crystal Structure Of Usp18
  • PDB_Info
  • PDB_Structure
  • Mus musculusChain B = 7.4e-102818View alignmentSCOP
    MMDB
    CATH
    Chain A = 7.4e-102818View alignment

    Last updated on 2016-09-15