PDB Homolog: RRP42/YDL111C Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein RRP42/YDL111C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2016-09-15

16 PDB homolog(s) found for yeast gene RRP42/YDL111C

RRP42/YDL111C links
  • Locus Info
  • PDB protein structure(s) homologous to RRP42Homolog Source (per PDB)Protein Alignment: RRP42 vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    4OO1 ( Chain: E)
    Structure Of An Rrp6-rna Exosome Complex Bound To Poly(a) Rna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c5.3e-1351000View alignmentSCOP
    MMDB
    CATH
    5G06 ( Chain: E)
    Cryo-em Structure Of Yeast Cytoplasmic Exosome
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae6.9e-1351000View alignmentSCOP
    MMDB
    CATH
    4IFD ( Chain: E)
    Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c6.9e-1351000View alignmentSCOP
    MMDB
    CATH
    5JEA ( Chain: E)
    Structure Of A Cytoplasmic 11-subunit Rna Exosome Complex Including Ski7, Bound To Rna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c6.9e-1351000View alignmentSCOP
    MMDB
    CATH
    5C0W ( Chain: E)
    Structure Of A 12-subunit Nuclear Exosome Complex Bound To Single- Stranded Rna Substrates
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c6.9e-1351000View alignmentSCOP
    MMDB
    CATH
    5C0X ( Chain: E)
    Structure Of A 12-subunit Nuclear Exosome Complex Bound To Structured Rna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288c6.9e-1351000View alignmentSCOP
    MMDB
    CATH
    2NN6 ( Chain: E)
    Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.7e-132527View alignmentSCOP
    MMDB
    CATH
    2WNR ( Chain: A, C, E)
    The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly
  • PDB_Info
  • PDB_Structure
  • Methanothermobacter thermautotrophicusChain A = 0.0006192422View alignmentSCOP
    MMDB
    CATH
    Chain C = 0.0006192422View alignment
    Chain E = 0.0006192422View alignment
    2PO0 ( Chain: B)
    Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Adp In Double Conformation
  • PDB_Info
  • PDB_Structure
  • Pyrococcus abyssi0.0014002126View alignmentSCOP
    MMDB
    CATH
    2PNZ ( Chain: B)
    Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp
  • PDB_Info
  • PDB_Structure
  • Pyrococcus abyssi0.0014002126View alignmentSCOP
    MMDB
    CATH
    2PO1 ( Chain: B)
    Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With A Single Stranded 10-Mer Poly(A) Rna
  • PDB_Info
  • PDB_Structure
  • Pyrococcus abyssi0.0014002126View alignmentSCOP
    MMDB
    CATH
    2PO2 ( Chain: B)
    Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Cdp
  • PDB_Info
  • PDB_Structure
  • Pyrococcus abyssi0.0014002126View alignmentSCOP
    MMDB
    CATH
    2BA0 ( Chain: I, H, G)
    Archaeal Exosome Core
  • PDB_Info
  • PDB_Structure
  • Archaeoglobus fulgidusChain I = 0.0035992223View alignmentSCOP
    MMDB
    CATH
    Chain H = 0.0035992223View alignment
    Chain G = 0.0035992223View alignment
    2BA1 ( Chain: G, H, I)
    Archaeal Exosome Core
  • PDB_Info
  • PDB_Structure
  • Archaeoglobus fulgidusChain G = 0.0035992223View alignmentSCOP
    MMDB
    CATH
    Chain H = 0.0035992223View alignment
    Chain I = 0.0035992223View alignment
    3M7N ( Chain: I, H, G)
    Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site
  • PDB_Info
  • PDB_Structure
  • Archaeoglobus fulgidusChain I = 0.0035992223View alignmentSCOP
    MMDB
    CATH
    Chain H = 0.0035992223View alignment
    Chain G = 0.0035992223View alignment
    3M85 ( Chain: G, H, I)
    Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site
  • PDB_Info
  • PDB_Structure
  • Archaeoglobus fulgidusChain G = 0.0080022222View alignmentSCOP
    MMDB
    CATH
    Chain H = 0.0080022222View alignment
    Chain I = 0.0080022222View alignment

    Last updated on 2016-09-15