PDB Homolog: NHP6B/YBR089C-A Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein NHP6B/YBR089C-A. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2014-12-05

52 PDB homolog(s) found for yeast gene NHP6B/YBR089C-A

NHP6B/YBR089C-A links
  • Locus Info
  • PDB protein structure(s) homologous to NHP6BHomolog Source (per PDB)Protein Alignment: NHP6B vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    1J5N ( Chain: A)
    Solution Structure Of The Non-Sequence-Specific Hmgb Protein Nhp6a In Complex With Sry Dna
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.8e-40897View alignmentSCOP
    MMDB
    CATH
    1LWM ( Chain: A)
    Solution Structure Of The Sequence-Non-Specific Hmgb Protein Nhp6a
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.8e-40897View alignmentSCOP
    MMDB
    CATH
    1CG7 ( Chain: A)
    Hmg Protein Nhp6a From Saccharomyces Cerevisiae
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae1.8e-40897View alignmentSCOP
    MMDB
    CATH
    2LHJ ( Chain: A)
    Nmr Structure Of The High Mobility Group Protein-Like Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
  • PDB_Info
  • PDB_Structure
  • Babesia bovis1.9e-174918View alignmentSCOP
    MMDB
    CATH
    2YRQ ( Chain: A)
    Solution Structure Of The Tandem Hmg Box Domain From Human High Mobility Group Protein B1
  • PDB_Info
  • PDB_Structure
  • Homo sapiens5.7e-164218View alignmentSCOP
    MMDB
    CATH
    2MRC ( Chain: A)
    Nmr Structure And 1h, 13c And 15n Chemical Shift Assignments For High Mobility Group Protein From Plasmodium Falciparum 3d7
  • PDB_Info
  • PDB_Structure
  • Plasmodium falciparum 3D73.1e-154915View alignmentSCOP
    MMDB
    CATH
    1J3D ( Chain: A)
    Solution Structure Of The C-Terminal Domain Of The Hmgb2
  • PDB_Info
  • PDB_Structure
  • Sus scrofa6.6e-154620View alignmentSCOP
    MMDB
    CATH
    1J3C ( Chain: A)
    Solution Structure Of The C-Terminal Domain Of The Hmgb2
  • PDB_Info
  • PDB_Structure
  • Sus scrofa8.6e-154520View alignmentSCOP
    MMDB
    CATH
    1HME ( Chain: A)
    Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
  • PDB_Info
  • PDB_Structure
  • Rattus norvegicus4.6e-144518View alignmentSCOP
    MMDB
    CATH
    1HMF ( Chain: A)
    Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
  • PDB_Info
  • PDB_Structure
  • Rattus norvegicus4.6e-144518View alignmentSCOP
    MMDB
    CATH
    2CO9 ( Chain: A)
    Solution Structure Of The Hmg_box Domain Of Thymus High Mobility Group Box Protein Tox From Mouse
  • PDB_Info
  • PDB_Structure
  • Mus musculus1.3e-133824View alignmentSCOP
    MMDB
    CATH
    1NHM ( Chain: A)
    The Structure Of The Hmg Box And Its Interaction With Dna
  • PDB_Info
  • PDB_Structure
  • Cricetulus griseus3.8e-124318View alignmentSCOP
    MMDB
    CATH
    1NHN ( Chain: A)
    The Structure Of The Hmg Box And Its Interaction With Dna
  • PDB_Info
  • PDB_Structure
  • Cricetulus griseus3.8e-124318View alignmentSCOP
    MMDB
    CATH
    1HSM ( Chain: A)
    The Structure Of The Hmg Box And Its Interaction With Dna
  • PDB_Info
  • PDB_Structure
  • Cricetulus griseus1.6e-114219View alignmentSCOP
    MMDB
    CATH
    1HSN ( Chain: A)
    The Structure Of The Hmg Box And Its Interaction With Dna
  • PDB_Info
  • PDB_Structure
  • Cricetulus griseus1.6e-114219View alignmentSCOP
    MMDB
    CATH
    1AAB ( Chain: A)
    Nmr Structure Of Rat Hmg1 Hmga Fragment
  • PDB_Info
  • PDB_Structure
  • Rattus norvegicus2.1e-113922View alignmentSCOP
    MMDB
    CATH
    2RTU ( Chain: A)
    Solution Structure Of Oxidized Human Hmgb1 A Box
  • PDB_Info
  • PDB_Structure
  • Homo sapiens5.5e-113920View alignmentSCOP
    MMDB
    CATH
    1J3X ( Chain: A)
    Solution Structure Of The N-Terminal Domain Of The Hmgb2
  • PDB_Info
  • PDB_Structure
  • Sus scrofa5.5e-113923View alignmentSCOP
    MMDB
    CATH
    2LY4 ( Chain: A)
    Hmgb1-Facilitated P53 Dna Binding Occurs Via Hmg-BoxP53 Transactivation Domain Interaction And Is Regulated By The Acidic Tail
  • PDB_Info
  • PDB_Structure
  • Homo sapiens5.5e-113920View alignmentSCOP
    MMDB
    CATH
    2YQI ( Chain: A)
    Solution Structure Of The Second Hmg-Box Domain From High Mobility Group Protein B3
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.1e-114216View alignmentSCOP
    MMDB
    CATH
    2EQZ ( Chain: A)
    Solution Structure Of The First Hmg-Box Domain From High Mobility Group Protein B3
  • PDB_Info
  • PDB_Structure
  • Homo sapiens1.8e-103820View alignmentSCOP
    MMDB
    CATH
    2CRJ ( Chain: A)
    Solution Structure Of The Hmg Domain Of Mouse Hmg Domain Protein Hmgx2
  • PDB_Info
  • PDB_Structure
  • Mus musculus2.1e-093326View alignmentSCOP
    MMDB
    CATH
    1CKT ( Chain: A)
    Crystal Structure Of Hmg1 Domain A Bound To A Cisplatin-modified Dna Duplex
  • PDB_Info
  • PDB_Structure
  • Rattus norvegicus2.1e-093921View alignmentSCOP
    MMDB
    CATH
    1WXL ( Chain: A)
    Solution Structure Of The Hmg-Box Domain In The Ssrp1 Subunit Of Fact
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogaster1.9e-083522View alignmentSCOP
    MMDB
    CATH
    1I11 ( Chain: A)
    Solution Structure Of The Dna Binding Domain, Sox-5 Hmg Box From Mouse
  • PDB_Info
  • PDB_Structure
  • Mus musculus8.4e-084021View alignmentSCOP
    MMDB
    CATH
    1HMA ( Chain: A)
    The Solution Structure And Dynamics Of The Dna Binding Domain Of Hmg-D From Drosophila Melanogaster
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogaster1.8e-073623View alignmentSCOP
    MMDB
    CATH
    1QRV ( Chain: A, B)
    Crystal Structure Of The Complex Of Hmg-D And Dna
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogasterChain A = 1.8e-073623View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.8e-073623View alignment
    1E7J ( Chain: A)
    Hmg-D Complexed To A Bulge Dna
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogaster1.8e-073623View alignmentSCOP
    MMDB
    CATH
    2YUL ( Chain: A)
    Solution Structure Of The Hmg Box Of Human Transcription Factor Sox-17
  • PDB_Info
  • PDB_Structure
  • Homo sapiens4.6e-072933View alignmentSCOP
    MMDB
    CATH
    4A3N ( Chain: A)
    Crystal Structure Of Hmg-box Of Human Sox17
  • PDB_Info
  • PDB_Structure
  • Homo sapiens5.9e-073534View alignmentSCOP
    MMDB
    CATH
    3F27 ( Chain: D)
    Structure Of Sox17 Bound To Dna
  • PDB_Info
  • PDB_Structure
  • Mus musculus5.9e-073534View alignmentSCOP
    MMDB
    CATH
    3NM9 ( Chain: A, D, G, J, M, P)
    Hmgd(M13a)-Dna Complex
  • PDB_Info
  • PDB_Structure
  • Drosophila melanogasterChain A = 7.5e-073423View alignmentSCOP
    MMDB
    CATH
    Chain D = 7.5e-073423View alignment
    Chain G = 7.5e-073423View alignment
    Chain J = 7.5e-073423View alignment
    Chain M = 7.5e-073423View alignment
    Chain P = 7.5e-073423View alignment
    2CS1 ( Chain: A)
    Solution Structure Of The Hmg Domain Of Human Dna Mismatch Repair Protein
  • PDB_Info
  • PDB_Structure
  • Homo sapiens6.7e-063714View alignmentSCOP
    MMDB
    CATH
    3TQ6 ( Chain: A, B)
    Crystal Structure Of Human Mitochondrial Transcription Factor A, Tfam Or Mttfa, Bound To The Light Strand Promoter Lsp
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.1e-052932View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.1e-052932View alignment
    4NNU ( Chain: A, B)
    Distinct Structural Features Of Tfam Drive Mitochondrial Dna Packaging Versus Transcriptional Activation
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.4e-052932View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.4e-052932View alignment
    4NOD ( Chain: A, B, G, H)
    Distinct Structural Features Of Tfam Drive Mitochondrial Dna Packaging Versus Transcriptional Activation
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 1.4e-052932View alignmentSCOP
    MMDB
    CATH
    Chain B = 1.4e-052932View alignment
    Chain G = 1.4e-052932View alignment
    Chain H = 1.4e-052932View alignment
    3TMM ( Chain: A)
    Tfam Imposes A U-Turn On Mitochondrial Dna
  • PDB_Info
  • PDB_Structure
  • Homo sapiens1.5e-052932View alignmentSCOP
    MMDB
    CATH
    1WGF ( Chain: A)
    Solution Structure Of The 4th Hmg-Box Of Mouse Ubf1
  • PDB_Info
  • PDB_Structure
  • Mus musculus3.7e-053127View alignmentSCOP
    MMDB
    CATH
    2E6O ( Chain: A)
    Solution Structure Of The Hmg Box Domain From Human Hmg-Box Transcription Factor 1
  • PDB_Info
  • PDB_Structure
  • Homo sapiens3.7e-053522View alignmentSCOP
    MMDB
    CATH
    1O4X ( Chain: B)
    Ternary Complex Of The Dna Binding Domains Of The Oct1 And Sox2 Transcription Factors With A 19mer Oligonucleotide From The Hoxb1 Regulatory Element
  • PDB_Info
  • PDB_Structure
  • Homo sapiens4.8e-053128View alignmentSCOP
    MMDB
    CATH
    1J47 ( Chain: A)
    3d Solution Nmr Structure Of The M9i Mutant Of The Hmg-Box Domain Of The Human Male Sex Determining Factor Sry Complexed To Dna
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.7e-053328View alignmentSCOP
    MMDB
    CATH
    1HRZ ( Chain: A)
    The 3d Structure Of The Human Sry-Dna Complex Solved By Multi-Dimensional Heteronuclear-Edited And-Filtered Nmr
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.7e-053328View alignmentSCOP
    MMDB
    CATH
    1HRY ( Chain: A)
    The 3d Structure Of The Human Sry-Dna Complex Solved By Multid-Dimensional Heteronuclear-Edited And-Filtered Nmr
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.7e-053328View alignmentSCOP
    MMDB
    CATH
    1J46 ( Chain: A)
    3d Solution Nmr Structure Of The Wild Type Hmg-Box Domain Of The Human Male Sex Determining Factor Sry Complexed To Dna
  • PDB_Info
  • PDB_Structure
  • Homo sapiens7.7e-053328View alignmentSCOP
    MMDB
    CATH
    1WZ6 ( Chain: A)
    Solution Structure Of The Hmg_box Domain Of Murine Bobby Sox Homolog
  • PDB_Info
  • PDB_Structure
  • Mus musculus0.0001603023View alignmentSCOP
    MMDB
    CATH
    2LE4 ( Chain: A)
    Solution Structure Of The Hmg Box Dna-Binding Domain Of Human Stem Cell Transcription Factor Sox2
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0001603128View alignmentSCOP
    MMDB
    CATH
    1GT0 ( Chain: D)
    Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
  • PDB_Info
  • PDB_Structure
  • Mus musculus0.0001603128View alignmentSCOP
    MMDB
    CATH
    1K99 ( Chain: A)
    Solution Structure Of The First Hmg Box In Human Upstream Binding Factor
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0002102925View alignmentSCOP
    MMDB
    CATH
    3U2B ( Chain: C)
    Structure Of The Sox4 Hmg Domain Bound To Dna
  • PDB_Info
  • PDB_Structure
  • Mus musculus0.0002103031View alignmentSCOP
    MMDB
    CATH
    2LEF ( Chain: A)
    Lef1 Hmg Domain (From Mouse), Complexed With Dna (15bp), Nmr, 12 Structures
  • PDB_Info
  • PDB_Structure
  • Mus musculus0.0004293324View alignmentSCOP
    MMDB
    CATH
    4EUW ( Chain: A)
    Crystal Structure Of A Hmg Domain Of Transcription Factor Sox-9 Bound To Dna (Sox-9DNA) FROM HOMO SAPIENS AT 2.77 A RESOLUTION
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0004292630View alignmentSCOP
    MMDB
    CATH
    3FGH ( Chain: A)
    Human Mitochondrial Transcription Factor A Box B
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0015003117View alignmentSCOP
    MMDB
    CATH

    Last updated on 2014-12-05