PDB Homolog: NMD2/YHR077C Help



This page presents information for the proteins of known structure with sequence similarity to the Saccharomyces cerevisiae protein NMD2/YHR077C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.
 
Last updated on 2014-06-05

76 PDB homolog(s) found for yeast gene NMD2/YHR077C

NMD2/YHR077C links
  • Locus Info
  • PDB protein structure(s) homologous to NMD2Homolog Source (per PDB)Protein Alignment: NMD2 vs. HomologExternal Links
    P-Value%Identical%SimilarAlignment
    1UW4 ( Chain: B, D)
    The Structural Basis Of The Interaction Between Nonsense Mediated Decay Factors Upf2 And Upf3
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain B = 2.2e-223020View alignmentSCOP
    MMDB
    CATH
    Chain D = 2.2e-223020View alignment
    4CEM ( Chain: A, B)
    Crystal Structure Of The First Mif4g Domain Of Human Nonsense Mediated Decay Factor Upf2
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain A = 3.2e-152420View alignmentSCOP
    MMDB
    CATH
    Chain B = 3.2e-152420View alignment
    4FP9 ( Chain: B, E, G, H)
    Human Mterf4-Nsun4 Protein Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain B = 3.6e-105121View alignmentSCOP
    MMDB
    CATH
    Chain E = 3.6e-105121View alignment
    Chain G = 3.6e-105121View alignment
    Chain H = 3.6e-105121View alignment
    3CXH ( Chain: Q, F)
    Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C Bound And Definition Of A Minimal Core Interface For Electron Transfer
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain Q = 8.4e-103331View alignmentSCOP
    MMDB
    CATH
    Chain F = 8.4e-103331View alignment
    3CX5 ( Chain: F, Q)
    Structure Of Complex Iii With Bound Cytochrome C In Reduced State And Definition Of A Minimal Core Interface For Electron Transfer.
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiaeChain F = 8.4e-103331View alignmentSCOP
    MMDB
    CATH
    Chain Q = 8.4e-103331View alignment
    3WA0 ( Chain: H, G)
    Merlin Complex
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain H = 3.3e-053526View alignmentSCOP
    MMDB
    CATH
    Chain G = 3.3e-053526View alignment
    2VAF ( Chain: A)
    Crystal Structure Of Human Cardiac Calsequestrin
  • PDB_Info
  • PDB_Structure
  • Homo sapiens0.0004693621View alignmentSCOP
    MMDB
    CATH
    3TJ1 ( Chain: B, A)
    Crystal Structure Of Rna Polymerase I Transcription Initiation Factor Rrn3
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae S288cChain B = 0.0008304911View alignmentSCOP
    MMDB
    CATH
    Chain A = 0.0008304911View alignment
    1JJ2 ( Chain: G)
    Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1KQS ( Chain: G)
    The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1K8A ( Chain: I)
    Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1K9M ( Chain: I)
    Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1KD1 ( Chain: I)
    Co-crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1M1K ( Chain: I)
    Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1M90 ( Chain: I)
    Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1K73 ( Chain: I)
    Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1KC8 ( Chain: I)
    Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1N8R ( Chain: I)
    Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1NJI ( Chain: I)
    Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1Q7Y ( Chain: I)
    Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1Q81 ( Chain: I)
    Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit.
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1Q82 ( Chain: I)
    Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1Q86 ( Chain: I)
    Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1QVF ( Chain: G)
    Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1QVG ( Chain: G)
    Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1S72 ( Chain: G)
    Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1W2B ( Chain: G)
    Trigger Factor Ribosome Binding Domain In Complex With 50s
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YHQ ( Chain: G)
    Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YI2 ( Chain: G)
    Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YIJ ( Chain: G)
    Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YIT ( Chain: G)
    Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YJ9 ( Chain: G)
    Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YJN ( Chain: G)
    Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1YJW ( Chain: G)
    Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ4 ( Chain: G)
    The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ5 ( Chain: G)
    The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ6 ( Chain: G)
    The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ7 ( Chain: G)
    The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ8 ( Chain: G)
    The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQ9 ( Chain: G)
    The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQK ( Chain: G)
    The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQL ( Chain: G)
    The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQM ( Chain: G)
    The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQN ( Chain: G)
    The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQO ( Chain: G)
    The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    1VQP ( Chain: G)
    The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    2OTJ ( Chain: G)
    13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    2OTL ( Chain: G)
    Girodazole Bound To The Large Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    2QA4 ( Chain: G)
    A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CME ( Chain: G)
    The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    2QEX ( Chain: G)
    Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CXC ( Chain: G)
    The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CC2 ( Chain: G)
    The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-derived Sequences For R-proteins
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CC4 ( Chain: G)
    Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CC7 ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCE ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCJ ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCL ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCM ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCQ ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCR ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCS ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCU ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CCV ( Chain: G)
    Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CD6 ( Chain: G)
    Co-cystal Of Large Ribosomal Subunit Mutant G2616a With Cc-puromycin
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CPW ( Chain: G)
    The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3CMA ( Chain: G)
    The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3G4S ( Chain: G)
    Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3G6E ( Chain: G)
    Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3G71 ( Chain: G)
    Co-crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3I55 ( Chain: G)
    Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    3I56 ( Chain: G)
    Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit
  • PDB_Info
  • PDB_Structure
  • Haloarcula marismortui0.0011003513View alignmentSCOP
    MMDB
    CATH
    2AYU ( Chain: A)
    The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling
  • PDB_Info
  • PDB_Structure
  • Saccharomyces cerevisiae0.0012003523View alignmentSCOP
    MMDB
    CATH
    4NFT ( Chain: E, F)
    Crystal Structure Of Human Lnkh2b-h2a.z-anp32e
  • PDB_Info
  • PDB_Structure
  • Homo sapiensChain E = 0.0015993723View alignmentSCOP
    MMDB
    CATH
    Chain F = 0.0015993723View alignment
    4GMN ( Chain: A)
    Structural Basis Of Rpl5 Recognition By Syo1
  • PDB_Info
  • PDB_Structure
  • Chaetomium thermophilum var. thermophilum DSM 14950.0080993311View alignmentSCOP
    MMDB
    CATH
    4GMO ( Chain: A)
    Crystal Structure Of Syo1
  • PDB_Info
  • PDB_Structure
  • Chaetomium thermophilum var. thermophilum DSM 14950.0081963311View alignmentSCOP
    MMDB
    CATH

    Last updated on 2014-06-05