Alignment of PRE10/YOR362C and PDB 3C92 (chain W)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein PRE10/YOR362C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene PRE10/YOR362C and PDB protein 3C92 (chain W)	Jump to Structure

Alignment Details

PRE10 length = 289 aa

Alignment Length = 171 aa (59.2%)

P-value = 1.5e-08

%Identity = 26

%Similar = 19

Alignment Position

Sequence Alignment

PRE10	35	`T`	`T`	`S`	`I`	`G`	`I`	`K`	`C`	`N`	`D`	`G`	`V`	`V`	`F`	`A`	`V`	`E`	`K`	`L`	`I`	`T`	`S`	`K`	`L`	`L`	`V`	`P`	`Q`	`K`	`N`	`-`	`V`	`K`	`I`	`Q`	`V`	`V`	`D`	`R`	`H`	`I`	`G`	`C`	`V`	`Y`	`S`	`G`	`L`	`I`	`P`	`D`	`G`	`R`	`H`	`L`	`V`	`N`	`R`	`G`	`R`	93
		`T`	`T`	`+`	`+`	`G`	`I`				`D`		`V`	`+`		`A`		`E`	`+`		`+`	`T`		`+`			`+`			`K`	`N`			`K`	`+`			`+`	`D`		`+`		`G`				`+`	`G`	`L`	`+`		`D`		`+`		`L`	`V`				`+`
3C92_(W)	1	`T`	`T`	`T`	`V`	`G`	`I`	`T`	`L`	`K`	`D`	`A`	`V`	`I`	`M`	`A`	`T`	`E`	`R`	`R`	`V`	`T`	`M`	`E`	`N`	`F`	`I`	`M`	`H`	`K`	`N`	`G`	`K`	`K`	`L`	`F`	`Q`	`I`	`D`	`T`	`Y`	`T`	`G`	`M`	`T`	`I`	`A`	`G`	`L`	`V`	`G`	`D`	`A`	`Q`	`V`	`L`	`V`	`R`	`Y`	`M`	`K`	60

PRE10	94	`E`	`E`	`A`	`A`	`S`	`F`	`K`	`K`	`L`	`Y`	`K`	`T`	`P`	`I`	`P`	`I`	`P`	`A`	`F`	`A`	`D`	`R`	`L`	`G`	`Q`	`Y`	`V`	`Q`	`A`	`H`	`T`	`L`	`Y`	`N`	`S`	`V`	`R`	`-`	`-`	`P`	`F`	`G`	`V`	`S`	`T`	`I`	`F`	`G`	`G`	`V`	`D`	`K`	`N`	`G`	`A`	`H`	`L`	`Y`	`M`	`L`	151
			`E`				`+`	`+`				`+`			`+`	`P`	`I`		`A`		`A`			`L`									`+`		`N`		`V`	`+`			`P`	`+`		`V`			`+`		`G`	`G`	`+`	`D`					`H`	`+`	`+`		`+`
3C92_(W)	61	`A`	`E`	`L`	`E`	`L`	`Y`	`R`	`L`	`Q`	`R`	`R`	`V`	`N`	`M`	`P`	`I`	`E`	`A`	`V`	`A`	`T`	`L`	`L`	`S`	`N`	`-`	`-`	`-`	`-`	`-`	`-`	`M`	`L`	`N`	`Q`	`V`	`K`	`Y`	`M`	`P`	`Y`	`M`	`V`	`Q`	`L`	`L`	`V`	`G`	`G`	`I`	`D`	`-`	`T`	`A`	`P`	`H`	`V`	`F`	`S`	`I`	113

PRE10	152	`E`	`P`	`S`	`G`	`S`	`Y`	`W`	`G`	`Y`	`K`	`G`	`A`	`A`	`T`	`G`	`K`	`G`	`R`	`Q`	`S`	`A`	`K`	`A`	`E`	`L`	`E`	`K`	`L`	`V`	`D`	`H`	`H`	`P`	`E`	`G`	`L`	`S`	`A`	`R`	`E`	`A`	`V`	`K`	`Q`	`A`	`A`	`K`	`I`	`I`	`Y`	`L`	`A`	`H`	`E`							205
		`+`		`+`	`G`								`A`	`+`	`T`	`G`		`G`								`L`	`E`						`+`		`E`		`+`	`+`			`E`		`V`					`+`		`I`			`A`		`+`
3C92_(W)	114	`D`	`A`	`A`	`G`	`G`	`S`	`V`	`E`	`D`	`I`	`Y`	`A`	`S`	`T`	`G`	`S`	`G`	`S`	`P`	`F`	`V`	`Y`	`G`	`V`	`L`	`E`	`S`	`-`	`-`	`-`	`Q`	`Y`	`S`	`E`	`K`	`M`	`T`	`V`	`D`	`E`	`G`	`V`	`D`	`L`	`V`	`I`	`R`	`A`	`I`	`S`	`A`	`A`	`K`	`Q`							164

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	3C92 (Chain W) Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
	PDB_Info
Homolog Source	Thermoplasma acidophilum
External Links	SCOP MMDB CATH

Last updated on 2013-03-12