Alignment of RPB11/YOL005C and PDB 3HKZ (chain V) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein RPB11/YOL005C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene RPB11/YOL005C and PDB protein 3HKZ (chain V)Jump to
Structure
Alignment Details
RPB11 length = 121 aaAlignment Length = 66 aa (54.5%)P-value = 9.6e-07%Identity = 41%Similar = 11
Alignment Position

Sequence Alignment

RPB11

29

NAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALK

88






N + + E EDHTLGNLI L V FA+Y HP + ++I T PKDAL


3HKZ_(V)

11

NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL

70

RPB11

89

NACNSI

94






A +I


3HKZ_(V)

71

KAIENI

76

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein3HKZ (Chain V)
The X-Ray Crystal Structure Of Rna Polymerase From Archaea
  • PDB_Info
  • Homolog SourceSulfolobus solfataricus P2
    External LinksSCOP
    MMDB
    CATH

    Last updated on 2014-12-05