Alignment of RPB11/YOL005C and PDB 2Y0S (chain L) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein RPB11/YOL005C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene RPB11/YOL005C and PDB protein 2Y0S (chain L)Jump to
Structure
Alignment Details
RPB11 length = 121 aaAlignment Length = 66 aa (54.5%)P-value = 1.5e-06%Identity = 39%Similar = 13
Alignment Position

Sequence Alignment

RPB11

29

NAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALK

88






N + + E EDHTLGNLI L V FA+Y HP + ++I T PKDAL


2Y0S_(L)

11

NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL

70

RPB11

89

NACNSI

94






A ++


2Y0S_(L)

71

KAIETV

76

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein2Y0S (Chain L)
Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group
  • PDB_Info
  • Homolog SourceSulfolobus shibatae
    External LinksSCOP
    MMDB
    CATH

    Last updated on 2014-06-05