Alignment of YNL284C-B and PDB 2X78 (chain C)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein YNL284C-B. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YNL284C-B and PDB protein 2X78 (chain C)	Jump to Structure

Alignment Details

YNL284C-B length = 1756 aa

Alignment Length = 184 aa (10.5%)

P-value = 0.005300

%Identity = 24

%Similar = 16

Alignment Position

Sequence Alignment

YNL284C-B	653	`G`	`S`	`R`	`L`	`K`	`Y`	`Q`	`N`	`S`	`Y`	`E`	`P`	`F`	`Q`	`Y`	`L`	`H`	`T`	`D`	`I`	`F`	`G`	`P`	`V`	`H`	`N`	`L`	`P`	`K`	`S`	`A`	`P`	`S`	`Y`	`F`	`I`	`S`	`F`	`T`	`D`	`E`	`T`	`T`	`K`	`F`	`R`	`W`	`V`	`Y`	`P`	`L`	`H`	`D`	`R`	`R`	`E`	`D`	`S`	`I`	`L`	712
		`G`			`L`	`+`						`+`	`P`	`F`						`D`			`G`	`P`	`+`				`P`						`Y`		`+`				`D`			`T`		`F`		`W`	`+`	`Y`	`P`								`+`		`+`
2X78_(C)	1	`G`	`P`	`I`	`L`	`R`	`P`	`D`	`R`	`P`	`Q`	`K`	`P`	`F`	`D`	`K`	`F`	`F`	`I`	`D`	`Y`	`I`	`G`	`P`	`L`	`P`	`-`	`-`	`P`	`S`	`Q`	`G`	`Y`	`L`	`Y`	`V`	`L`	`V`	`V`	`V`	`D`	`G`	`M`	`T`	`G`	`F`	`T`	`W`	`L`	`Y`	`P`	`T`	`K`	`A`	`P`	`S`	`T`	`S`	`A`	`T`	`V`	58

YNL284C-B	713	`D`	`V`	`F`	`T`	`T`	`I`	`L`	`A`	`F`	`I`	`K`	`N`	`Q`	`F`	`Q`	`A`	`S`	`V`	`L`	`V`	`I`	`Q`	`M`	`D`	`R`	`G`	`S`	`E`	`Y`	`T`	`N`	`R`	`T`	`L`	`H`	`K`	`F`	`L`	`E`	`K`	`N`	`G`	`I`	`T`	`P`	`C`	`Y`	`T`	`T`	`T`	`A`	`D`	`S`	`R`	`A`	`H`	`G`	`V`	`A`	`E`	772
							`+`		`+`								`A`				`V`	`I`			`D`	`+`	`G`	`+`		`+`	`T`	`+`		`T`			`+`	`+`		`+`	`+`		`G`	`I`				`+`	`+`	`T`					`+`	`+`					`E`
2X78_(C)	59	`K`	`S`	`L`	`N`	`V`	`L`	`T`	`S`	`I`	`-`	`-`	`-`	`-`	`-`	`-`	`A`	`I`	`P`	`R`	`V`	`I`	`H`	`S`	`D`	`Q`	`G`	`A`	`A`	`F`	`T`	`S`	`S`	`T`	`F`	`A`	`E`	`W`	`A`	`K`	`E`	`R`	`G`	`I`	`H`	`L`	`E`	`F`	`S`	`T`	`P`	`Y`	`H`	`P`	`Q`	`S`	`G`	`S`	`K`	`V`	`E`	112

YNL284C-B	773	`R`	`L`	`N`	`R`	`T`	`L`	`L`	`D`	`D`	`C`	`R`	`T`	`Q`	`L`	`Q`	`C`	`S`	`G`	`L`	`P`	`N`	`H`	`L`	`W`	`F`	`S`	`A`	`I`	`E`	`F`	`S`	`T`	`I`	`V`	`R`	`N`	`S`	`L`	`A`	`S`	`P`	`K`	`S`	`K`	`K`	`S`	`A`	`R`	`Q`	`H`	`A`	`G`	`L`	`A`	`G`	`L`	`D`	`I`	`S`	`T`	832
		`R`		`N`			`+`						`T`	`+`	`L`				`G`		`P`				`W`	`+`			`+`					`+`			`N`	`+`			`S`	`P`			`K`		`+`				`H`			`L`		`G`	`+`	`D`		`+`	`T`
2X78_(C)	113	`R`	`K`	`N`	`S`	`D`	`I`	`-`	`K`	`R`	`L`	`L`	`T`	`K`	`L`	`L`	`V`	`-`	`G`	`R`	`P`	`T`	`K`	`-`	`W`	`Y`	`D`	`L`	`L`	`P`	`V`	`V`	`Q`	`L`	`A`	`L`	`N`	`N`	`T`	`Y`	`S`	`P`	`V`	`L`	`K`	`Y`	`T`	`P`	`-`	`-`	`H`	`Q`	`L`	`L`	`F`	`G`	`I`	`D`	`S`	`N`	`T`	167

YNL284C-B	833	`L`	`L`	`P`	`F`																																																									836
				`P`	`F`
2X78_(C)	168	`-`	`-`	`P`	`F`																																																									169

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	2X78 (Chain C) Human Foamy Virus Integrase - Catalytic Core
	PDB_Info
Homolog Source	Human spumaretrovirus
External Links	SCOP MMDB CATH

Last updated on 2013-03-12