Alignment of YML133W-A and PDB 3S6L (chain D)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein YML133W-A. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YML133W-A and PDB protein 3S6L (chain D)	Jump to Structure

Alignment Details

YML133W-A length = 192 aa

Alignment Length = 142 aa (74%)

P-value = 0.000599

%Identity = 28

%Similar = 19

Alignment Position

Sequence Alignment

YML133W-A	3	`S`	`I`	`I`	`L`	`S`	`I`	`A`	`I`	`F`	`I`	`G`	`V`	`L`	`L`	`G`	`T`	`S`	`V`	`G`	`-`	`T`	`F`	`S`	`G`	`S`	`G`	`I`	`S`	`A`	`G`	`V`	`G`	`A`	`S`	`S`	`G`	`S`	`G`	`I`	`S`	`A`	`G`	`V`	`G`	`A`	`S`	`S`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	`G`	`T`	`-`	`-`	`F`	59
		`S`	`+`		`L`	`S`		`A`	`+`			`G`		`+`			`+`	`S`	`+`	`G`		`T`		`+`	`G`	`+`	`G`		`+`	`A`			`G`			`+`	`G`	`+`		`+`						`A`	`S`				`+`	`T`	`+`	`+`	`G`			`+`
3S6L_(D)	4	`S`	`M`	`S`	`L`	`S`	`T`	`A`	`V`	`S`	`G`	`G`	`G`	`V`	`R`	`T`	`S`	`S`	`L`	`G`	`D`	`T`	`S`	`A`	`G`	`N`	`G`	`A`	`N`	`A`	`S`	`G`	`G`	`-`	`-`	`N`	`G`	`T`	`A`	`V`	`G`	`G`	`A`	`A`	`S`	`A`	`S`	`G`	`T`	`D`	`A`	`T`	`A`	`L`	`G`	`Q`	`A`	`S`	`N`	`A`	`S`	61

YML133W-A	60	`G`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	`G`	`T`	`F`	`G`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	`G`	`T`	`F`	`S`	`G`	`S`	`R`	`T`	`S`	`P`	`D`	`V`	`D`	`A`	`G`	`S`	`G`	`S`	`S`	`T`	`S`	`P`	`D`	`V`	`G`	`A`	`G`	`S`	`G`	`S`	`S`	`I`	`S`	`A`	`-`	`G`	`V`	`G`	`T`	118
		`G`			`S`	`T`	`+`	`+`	`G`			`+`					`S`		`S`			`V`	`G`			`+`	`G`	`+`				`P`					`G`		`G`	`+`	`S`									`S`	`G`	`+`			`+`	`A`		`G`			`+`
3S6L_(D)	62	`G`	`N`	`H`	`S`	`T`	`A`	`L`	`G`	`Q`	`A`	`S`	`S`	`A`	`S`	`G`	`S`	`G`	`S`	`T`	`A`	`V`	`G`	`Q`	`G`	`A`	`G`	`A`	`-`	`-`	`-`	`P`	`-`	`-`	`-`	`-`	`G`	`D`	`G`	`A`	`S`	`A`	`F`	`G`	`Q`	`G`	`A`	`L`	`A`	`S`	`G`	`T`	`D`	`S`	`T`	`A`	`L`	`G`	`A`	`H`	`S`	114

YML133W-A	119	`F`	`S`	`G`	`S`	`R`	`T`	`S`	`P`	`D`	`V`	`D`	`A`	`G`	`S`	`G`	`S`	`S`	`T`	`S`	`P`	`D`	`V`	`G`	`A`	`G`	`S`																																			144
			`+`		`+`			`S`			`+`		`A`		`S`		`+`	`S`					`V`			`G`	`S`
3S6L_(D)	115	`T`	`A`	`A`	`A`	`P`	`N`	`S`	`A`	`A`	`I`	`G`	`A`	`N`	`S`	`V`	`A`	`S`	`A`	`P`	`N`	`S`	`V`	`S`	`F`	`G`	`S`																																			140

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	3S6L (Chain D) Crystal Structure Of A Yada-Like Head Domain Of The Trimeric Autotransporter Adhesin Boaa From Burkholderia Pseudomallei Solved By Iodide Ion Sad Phasing
	PDB_Info
Homolog Source	Burkholderia pseudomallei 1710b
External Links	SCOP MMDB CATH

Last updated on 2013-03-12