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Alignment of YML133W-A and PDB 3S6L (chain C) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein YML133W-A. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YML133W-A and PDB protein 3S6L (chain C)Jump to
Structure
Alignment Details
YML133W-A length = 192 aaAlignment Length = 142 aa (74%)P-value = 0.000700%Identity = 28%Similar = 19
Alignment Position

Sequence Alignment

YML133W-A

3

SIILSIAIFIGVLLGTSVG-TFSGSGISAGVGASSGSGISAGVGASSGSSTSVGVGT--F

59






S+ LS A+ G + +S+G T +G+G +A G +G+ + AS +T++G +


3S6L_(C)

4

SMSLSTAVSGGGVRTSSLGDTSAGNGANASGG--NGTAVGGAASASGTDATALGQASNAS

61

YML133W-A

60

GGSSTSVGVGTFGGSSTSVGVGTFSGSRTSPDVDAGSGSSTSPDVGAGSGSSISA-GVGT

118






G ST++G + S S VG +G+ P G G+S SG+ +A G +


3S6L_(C)

62

GNHSTALGQASSASGSGSTAVGQGAGA---P----GDGASAFGQGALASGTDSTALGAHS

114

YML133W-A

119

FSGSRTSPDVDAGSGSSTSPDVGAGS

144






+ + S + A S +S V GS


3S6L_(C)

115

TAAAPNSAAIGANSVASAPNSVSFGS

140

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein3S6L (Chain C)
Crystal Structure Of A Yada-Like Head Domain Of The Trimeric Autotransporter Adhesin Boaa From Burkholderia Pseudomallei Solved By Iodide Ion Sad Phasing
  • PDB_Info
  • Homolog SourceBurkholderia pseudomallei 1710b
    External LinksSCOP
    MMDB
    CATH

    Last updated on 2014-06-05