Alignment of YML133W-A and PDB 3BOG (chain B)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein YML133W-A. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YML133W-A and PDB protein 3BOG (chain B)	Jump to Structure

Alignment Details

YML133W-A length = 192 aa

Alignment Length = 70 aa (36.5%)

P-value = 0.000999

%Identity = 36

%Similar = 8

Alignment Position

Sequence Alignment

YML133W-A	21	`G`	`T`	`F`	`S`	`G`	`S`	`G`	`I`	`S`	`A`	`G`	`V`	`G`	`A`	`S`	`S`	`G`	`S`	`G`	`I`	`S`	`A`	`G`	`V`	`G`	`A`	`S`	`S`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	`G`	`T`	`F`	`G`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	`G`	`T`	`F`	`G`	`G`	`S`	`S`	`T`	`S`	`V`	`G`	`V`	80
		`G`	`T`				`+`	`G`				`G`		`G`				`G`		`G`				`G`		`G`		`+`						`+`		`G`	`V`	`G`			`G`	`G`	`+`	`S`				`G`	`V`	`G`			`G`	`G`						`G`
3BOG_(B)	15	`G`	`T`	`A`	`G`	`A`	`A`	`G`	`S`	`V`	`G`	`G`	`P`	`G`	`C`	`D`	`G`	`G`	`H`	`G`	`-`	`-`	`-`	`G`	`N`	`G`	`G`	`N`	`G`	`N`	`P`	`G`	`C`	`A`	`G`	`G`	`V`	`G`	`G`	`A`	`G`	`G`	`A`	`S`	`G`	`G`	`T`	`G`	`V`	`G`	`G`	`R`	`G`	`G`	`K`	`G`	`-`	`-`	`-`	`G`	`S`	68

YML133W-A	81	`G`	`T`	`F`	`S`	`G`	`S`	`R`	`T`	`S`	`P`																																																			90
		`G`	`T`			`G`	`+`			`+`	`P`
3BOG_(B)	69	`G`	`T`	`P`	`K`	`G`	`A`	`D`	`G`	`A`	`P`																																																			78

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	3BOG (Chain B) Snow Flea Antifreeze Protein Quasi-Racemate
	PDB_Info
Homolog Source	synthetic construct
External Links	SCOP MMDB CATH

Last updated on 2013-03-12