Alignment of YML133W-A and PDB 1DEQ (chain D) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein YML133W-A. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YML133W-A and PDB protein 1DEQ (chain D)Jump to
Structure
Alignment Details
YML133W-A length = 192 aaAlignment Length = 133 aa (69.3%)P-value = 0.001899%Identity = 29%Similar = 18
Alignment Position

Sequence Alignment

YML133W-A

22

TFSGSGISAGVGASSGSGISAGVGASSGSST--SVGVGTFGGSSTSVGVGTFGGSSTSVG

79






TF G G + G S G+G++ G G+S+ +V G++G S+ GT+ G


1DEQ_(D)

247

TFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSS----GTWNPGRPEPG

302

YML133W-A

80

-VGTFSGSRTSPDVDAGSGSSTSPDVG-AGS---GSSISAGVGTFSGSRTSPDVDAGSGS

134






GT++ R P AG+ + P+ G AG+ G GT++ R P AG+ +


1DEQ_(D)

303

SAGTWNPGRPEPG-SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG-SAGTWN

360

YML133W-A

135

STSPDVGAGSGSSISAGVGS

154






+ S G+ S S+G G+


1DEQ_(D)

361

TGSS--GSSSFRPDSSGHGN

378

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein1DEQ (Chain D)
The Crystal Structure Of Modified Bovine Fibrinogen (At ~4 Angstrom Resolution)
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  • Homolog SourceBos taurus
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    Last updated on 2014-06-05