Alignment of YLR410W-B and PDB 3DLR (chain A) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein YLR410W-B. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YLR410W-B and PDB protein 3DLR (chain A)Jump to
Structure
Alignment Details
YLR410W-B length = 1771 aaAlignment Length = 184 aa (10.4%)P-value = 0.000149%Identity = 28%Similar = 12
Alignment Position

Sequence Alignment

YLR410W-B

649

GSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESI-

707






G L+ +PF D GP+ P Y + D T F W+YP +


3DLR_(A)

5

GPILRPDRPQKPFDKFFIDYIGPLP--PSQGYLYVLVVVDGXTGFTWLYPTKAPSTSATV

62

YLR410W-B

708

--LNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHG

765






LNV TSI A K VI D+G+ +T+ T ++ RGI ++T ++ G


3DLR_(A)

63

KSLNVLTSI-AIPK--------VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSG

113

YLR410W-B

766

VAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLD

825






ER N + LL G P W+ + + N+ SP + H L G+D


3DLR_(A)

114

KVERKNSDIKRLLTKLL--VGRPTK-WYDLLPVVQLALNNTYSPVLKYTP--HQLLFGID

168

YLR410W-B

826

ITTILPF

832






T PF


3DLR_(A)

169

SNT--PF

173

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein3DLR (Chain A)
Crystal Structure Of The Catalytic Core Domain From Pfv Integrase
  • PDB_Info
  • Homolog SourceHuman spumaretrovirus
    External LinksSCOP
    MMDB
    CATH

    Last updated on 2014-12-05