Alignment of FIS1/YIL065C and PDB 1IYG (chain A)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein FIS1/YIL065C. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using Smith-Waterman analysis program.

Alignment of yeast gene FIS1/YIL065C and PDB protein 1IYG (chain A)	Jump to Structure

Alignment Details

FIS1 length = 156 aa

Alignment Length = 107 aa (68.6%)

P-value = 4.7e-08

%Identity = 28

%Similar = 42

Alignment Position

Sequence Alignment

FIS1	20	`Q`	`Q`	`L`	`E`	`I`	`L`	`R`	`Q`	`Q`	`V`	`V`	`S`	`E`	`-`	`G`	`G`	`P`	`T`	`A`	`T`	`I`	`Q`	`S`	`R`	`F`	`N`	`Y`	`A`	`W`	`G`	`L`	`I`	`K`	`S`	`T`	`D`	`V`	`N`	`D`	`E`	`R`	`L`	`G`	`V`	`K`	`I`	`L`	`T`	`D`	`I`	`Y`	`-`	`K`	`E`	`A`	`E`	`S`	`R`	`R`	`R`	77
		`.`	`.`	`:`	`.`		`.`	`.`	`.`	`.`			`:`	`:`		`.`	`.`		`.`	`.`	`.`		`.`	`.`	`.`	`:`	`.`	`:`	`:`	`:`		`:`	`.`	`.`	`:`				`.`	`:`		`:`		`:`	`.`		`.`	`:`		`.`	`.`			`:`		`.`	`.`		`.`	`.`	`:`
1IYG_(A)	19	`E`	`D`	`L`	`K`	`N`	`F`	`E`	`R`	`K`	`F`	`Q`	`S`	`E`	`Q`	`A`	`A`	`G`	`S`	`V`	`S`	`K`	`S`	`T`	`Q`	`F`	`E`	`Y`	`A`	`W`	`C`	`L`	`V`	`R`	`S`	`K`	`Y`	`N`	`E`	`D`	`I`	`R`	`R`	`G`	`I`	`V`	`L`	`L`	`E`	`E`	`L`	`L`	`P`	`K`	`G`	`S`	`K`	`E`	`E`	`Q`	`R`	78

FIS1	78	`E`	`C`	`L`	`Y`	`Y`	`L`	`T`	`I`	`G`	`C`	`Y`	`K`	`L`	`G`	`E`	`Y`	`S`	`M`	`A`	`K`	`R`	`Y`	`V`	`D`	`T`	`L`	`F`	`E`	`H`	`E`	`R`	`N`	`N`	`K`	`Q`	`V`	`G`	`A`	`L`	`K`	`S`	`M`	`V`	`E`	`D`	`K`	`I`	`Q`	`K`												126
		`.`		`.`	`.`	`:`	`:`	`.`	`.`	`:`		`:`	`.`	`:`		`:`	`:`			`:`		`.`	`:`	`:`			`:`	`.`	`.`		`:`		`.`	`:`	`.`	`:`	`.`			`:`	`.`		`.`	`.`	`.`			`.`	`.`	`:`
1IYG_(A)	79	`D`	`Y`	`V`	`F`	`Y`	`L`	`A`	`V`	`G`	`N`	`Y`	`R`	`L`	`K`	`E`	`Y`	`E`	`K`	`A`	`L`	`K`	`Y`	`V`	`R`	`G`	`L`	`L`	`Q`	`T`	`E`	`P`	`Q`	`N`	`N`	`Q`	`A`	`K`	`E`	`L`	`E`	`R`	`L`	`I`	`D`	`K`	`A`	`M`	`K`	`K`												127

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	1iyg (Chain A) Solution structure of rsgi ruh-001, a fis1p-like and cgi- 135 homologous domain from a mouse cdna
	PDB_Info
Homolog Source	Mus musculus
External Links	SCOP MMDB CATH

Last updated on 2009-11-10

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