Alignment of YDR034C-D and PDB 3OYI (chain A)

This page compares a protein of known structure to the Saccharomyces cerevisiae protein YDR034C-D. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YDR034C-D and PDB protein 3OYI (chain A)	Jump to Structure

Alignment Details

YDR034C-D length = 1771 aa

Alignment Length = 201 aa (11.3%)

P-value = 1.7e-05

%Identity = 27

%Similar = 13

Alignment Position

Sequence Alignment

YDR034C-D	632	`Q`	`C`	`P`	`D`	`C`	`L`	`I`	`G`	`K`	`S`	`T`	`K`	`H`	`R`	`H`	`V`	`K`	`G`	`S`	`R`	`L`	`K`	`Y`	`Q`	`E`	`S`	`Y`	`E`	`P`	`F`	`Q`	`Y`	`L`	`H`	`T`	`D`	`I`	`F`	`G`	`P`	`V`	`H`	`H`	`L`	`P`	`K`	`S`	`A`	`P`	`S`	`Y`	`F`	`I`	`S`	`F`	`T`	`D`	`E`	`K`	`T`	691
		`+`	`C`			`C`	`L`	`I`			`+`	`+`							`G`			`L`	`+`						`+`	`P`	`F`						`D`			`G`	`P`	`+`				`P`						`Y`		`+`				`D`			`T`
3OYI_(A)	98	`R`	`C`	`Q`	`Q`	`C`	`L`	`I`	`T`	`N`	`A`	`S`	`N`	`K`	`-`	`-`	`A`	`S`	`G`	`P`	`I`	`L`	`R`	`P`	`D`	`R`	`P`	`Q`	`K`	`P`	`F`	`D`	`K`	`F`	`F`	`I`	`D`	`Y`	`I`	`G`	`P`	`L`	`P`	`-`	`-`	`P`	`S`	`Q`	`G`	`Y`	`L`	`Y`	`V`	`L`	`V`	`V`	`V`	`D`	`G`	`M`	`T`	153

YDR034C-D	692	`R`	`F`	`Q`	`W`	`V`	`Y`	`P`	`L`	`H`	`D`	`R`	`R`	`E`	`E`	`S`	`I`	`-`	`-`	`-`	`L`	`N`	`V`	`F`	`T`	`S`	`I`	`L`	`A`	`F`	`I`	`K`	`N`	`Q`	`F`	`N`	`A`	`R`	`V`	`L`	`V`	`I`	`Q`	`M`	`D`	`R`	`G`	`S`	`E`	`Y`	`T`	`N`	`K`	`T`	`L`	`H`	`K`	`F`	`F`	`T`	`N`	748
			`F`		`W`	`+`	`Y`	`P`								`+`					`L`	`N`	`V`		`T`	`S`	`I`		`A`			`K`									`V`	`I`			`D`	`+`	`G`	`+`		`+`	`T`	`+`		`T`			`+`	`+`
3OYI_(A)	154	`G`	`F`	`T`	`W`	`L`	`Y`	`P`	`T`	`K`	`A`	`P`	`S`	`T`	`S`	`A`	`T`	`V`	`K`	`S`	`L`	`N`	`V`	`L`	`T`	`S`	`I`	`-`	`A`	`I`	`P`	`K`	`-`	`-`	`-`	`-`	`-`	`-`	`-`	`-`	`V`	`I`	`H`	`S`	`D`	`Q`	`G`	`A`	`A`	`F`	`T`	`S`	`S`	`T`	`F`	`A`	`E`	`W`	`A`	`K`	`E`	204

YDR034C-D	749	`R`	`G`	`I`	`T`	`A`	`C`	`Y`	`T`	`T`	`T`	`A`	`D`	`S`	`R`	`A`	`H`	`G`	`V`	`A`	`E`	`R`	`L`	`N`	`R`	`T`	`L`	`L`	`N`	`D`	`C`	`R`	`T`	`L`	`L`	`H`	`C`	`S`	`G`	`L`	`P`	`N`	`H`	`L`	`W`	`F`	`S`	`A`	`V`	`E`	`F`	`S`	`T`	`I`	`I`	`R`	`N`	`S`	`L`	`V`	`S`	808
		`R`	`G`	`I`				`+`	`+`	`T`					`+`	`+`		`G`			`E`	`R`		`N`			`+`							`L`	`L`				`G`		`P`				`W`	`+`			`+`					`+`			`N`	`+`			`S`
3OYI_(A)	205	`R`	`G`	`I`	`H`	`L`	`E`	`F`	`S`	`T`	`P`	`Y`	`H`	`P`	`Q`	`S`	`Q`	`G`	`K`	`V`	`E`	`R`	`K`	`N`	`S`	`D`	`I`	`K`	`R`	`L`	`L`	`T`	`K`	`L`	`L`	`-`	`-`	`V`	`G`	`R`	`P`	`T`	`K`	`-`	`W`	`Y`	`D`	`L`	`L`	`P`	`V`	`V`	`Q`	`L`	`A`	`L`	`N`	`N`	`T`	`Y`	`S`	261

YDR034C-D	809	`P`	`K`	`N`	`D`	`K`	`S`	`A`	`R`	`Q`	`H`	`A`	`G`	`L`	`A`	`G`	`L`	`D`	`I`	`T`	`T`	`I`	`L`	`P`	`F`																																					832
		`P`					`+`				`H`			`L`		`G`	`+`	`D`			`T`			`P`	`F`
3OYI_(A)	262	`P`	`V`	`L`	`K`	`Y`	`T`	`P`	`-`	`-`	`H`	`Q`	`L`	`L`	`F`	`G`	`I`	`D`	`S`	`N`	`T`	`-`	`-`	`P`	`F`																																					281

Homolog Structure

Information provided by The RCSB Protein Databank (PDB)		Jump to alignment
PDB protein	3OYI (Chain A) Crystal Structure Of The Pfv S217q Mutant Intasome In Complex With Manganese
	PDB_Info
Homolog Source	Human spumaretrovirus
External Links	SCOP MMDB CATH

Last updated on 2013-03-12