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Alignment of YDR034C-D and PDB 3L2Q (chain B) Help



This page compares a protein of known structure to the Saccharomyces cerevisiae protein YDR034C-D. The analysis was performed by comparing yeast protein sequences against protein sequences in The RCSB Protein Databank (PDB) using WU-BLAST.

Alignment of yeast gene YDR034C-D and PDB protein 3L2Q (chain B)Jump to
Structure
Alignment Details
YDR034C-D length = 1771 aaAlignment Length = 201 aa (11.3%)P-value = 2.6e-05%Identity = 27%Similar = 13
Alignment Position

Sequence Alignment

YDR034C-D

632

QCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKT

691






+C CLI ++ G L+ +PF D GP+ P Y + D T


3L2Q_(B)

98

RCQQCLITNASNK--ASGPILRPDRPQKPFDKFFIDYIGPLP--PSQGYLYVLVVVDGMT

153

YDR034C-D

692

RFQWVYPLHDRREESI---LNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTN

748






F W+YP + LNV TSI A K VI D+G+ +T+ T ++


3L2Q_(B)

154

GFTWLYPTKAPSTSATVKSLNVLTSI-AIPK--------VIHSDQGAAFTSSTFAEWAKE

204

YDR034C-D

749

RGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS

808






RGI ++T ++ G ER N + LL G P W+ + + N+ S


3L2Q_(B)

205

RGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLL--VGRPTK-WYDLLPVVQLALNNTYS

261

YDR034C-D

809

PKNDKSARQHAGLAGLDITTILPF

832






P + H L G+D T PF


3L2Q_(B)

262

PVLKYTP--HQLLFGIDSNT--PF

281

Homolog Structure
Information provided by The RCSB Protein Databank (PDB)Jump to
alignment
PDB protein3L2Q (Chain B)
Crystal Structure Of The Prototype Foamy Virus (Pfv) Intasome In Apo Form
  • PDB_Info
  • Homolog SourceHuman spumaretrovirus
    External LinksSCOP
    MMDB
    CATH

    Last updated on 2014-06-05