YCL001W-B Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ycl001w-bp domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Ycl001w-bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ycl001w-bp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Ycl001w-bp
Protein	Motifs in common with Ycl001w-bp	Other motifs in this protein (but not in Ycl001w-bp )
Sup45p	SUPERFAMILY SSF55315: L30e-like Pfam PF03465: eRF1_3 Gene3D G3DSA:3.30.1330.30: no description	SUPERFAMILY SSF55481: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 SUPERFAMILY SSF53137: Translational machinery components Pfam PF03464: eRF1_2 Pfam PF03463: eRF1_1 PANTHER PTHR10113: PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 Gene3D G3DSA:3.30.960.10: no description Gene3D G3DSA:3.30.420.60: no description TIGRFAMs TIGR03676: aRF1/eRF1: peptide chain release factor 1, archaea
Ycl001w-ap	PANTHER PTHR10853: PELOTA	none
Nhp2p	Gene3D G3DSA:3.30.1330.30: no description SUPERFAMILY SSF55315: L30e-like	PRINTS PR00881: L7ARS6FAMILY PRINTS PR00883: NUCLEARHMG Pfam PF01248: Ribosomal_L7Ae PANTHER PTHR23105:SF12: NUCLEOLAR PROTEIN FAMILY A MEMBER 2 PANTHER PTHR23105: RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
Snu13p	SUPERFAMILY SSF55315: L30e-like Gene3D G3DSA:3.30.1330.30: no description	Pfam PF01248: Ribosomal_L7Ae PANTHER PTHR23105:SF11: RIBOSOMAL PROTEIN L7AE PANTHER PTHR23105: RIBOSOMAL PROTEIN L7AE FAMILY MEMBER PRINTS PR00883: NUCLEARHMG PRINTS PR00881: L7ARS6FAMILY
Rpl30p	SUPERFAMILY SSF55315: L30e-like Gene3D G3DSA:3.30.1330.30: no description	Pfam PF01248: Ribosomal_L7Ae PANTHER PTHR11449: RIBOSOMAL PROTEIN L30
Rpl8ap	SUPERFAMILY SSF55315: L30e-like Gene3D G3DSA:3.30.1330.30: no description	PANTHER PTHR23105:SF1: 60S RIBOSOMAL PROTEIN L7A PANTHER PTHR23105: RIBOSOMAL PROTEIN L7AE FAMILY MEMBER PRINTS PR00882: RIBOSOMALL7A PRINTS PR00881: L7ARS6FAMILY Pfam PF01248: Ribosomal_L7Ae
Rpl8bp	Gene3D G3DSA:3.30.1330.30: no description SUPERFAMILY SSF55315: L30e-like	PRINTS PR00882: RIBOSOMALL7A PRINTS PR00881: L7ARS6FAMILY PANTHER PTHR23105:SF1: 60S RIBOSOMAL PROTEIN L7A PANTHER PTHR23105: RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Pfam PF01248: Ribosomal_L7Ae
Dom34p	SUPERFAMILY SSF55315: L30e-like Gene3D G3DSA:3.30.1330.30: no description Pfam PF03465: eRF1_3 PANTHER PTHR10853: PELOTA	TIGRFAMs TIGR00111: pelota: mRNA surveillance protein pelota Pfam PF03464: eRF1_2 Pfam PF03463: eRF1_1
Mrm1p	Gene3D G3DSA:3.30.1330.30: no description SUPERFAMILY SSF55315: L30e-like	Gene3D G3DSA:3.40.1280.10: no description TIGRFAMs TIGR00186: rRNA_methyl_3: RNA methyltransferase, TrmH family, SMART SM00967: RNA 2'-O ribose methyltransferase subst SUPERFAMILY SSF75217: alpha/beta knot Pfam PF00588: SpoU_methylase Pfam PF08032: SpoU_sub_bind PANTHER PTHR12029:SF7: RRNA METHYLASE PANTHER PTHR12029: RNA METHYLTRANSFERASE
Rps12p	SUPERFAMILY SSF55315: L30e-like Gene3D G3DSA:3.30.1330.30: no description	PANTHER PTHR11843: 40S RIBOSOMAL PROTEIN S12 Pfam PF01248: Ribosomal_L7Ae PRINTS PR00972: RIBSOMALS12E

Unique domains/motifs

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This table lists domains/motifs that are unique to Ycl001w-bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ycl001w-bp domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Ycl001w-bp .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ycl001w-bp .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ycl001w-bp .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Ycl001w-bp .