YDR261C-D Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ydr261c-dp domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Ydr261c-dp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ydr261c-dp domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Ydr261c-dp
Protein Motifs in common with Ydr261c-dp Other motifs in this protein (but not in Ydr261c-dp )
Yar009cp Gene3D G3DSA:3.30.420.10: no description
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
none
Yar010cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ybl005w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ybl005w-bp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
none
Ybl100w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ybl100w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF13976: gag_pre-integrs
Ybr012w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ybr012w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
none
Ycl019wp Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF13976: gag_pre-integrs
Ycl020wp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Gfd2p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
none
Ycl074wp SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF07727: RVT_2
PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT)
Ycl075wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT)
Pol3p SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2)
Gene3D G3DSA:3.90.1600.10: no description
Gene3D G3DSA:1.10.287.690: no description
Pfam PF00136: DNA_pol_B
Pfam PF03104: DNA_pol_B_exo1
Pfam PF14260: zf-C4pol
PANTHER PTHR10322:SF11: DNA POLYMERASE DELTA CATALYTIC SUBUNIT
PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT
PRINTS PR00106: DNAPOLB
SMART SM00486: DNA polymerase type-B family
Ydr034c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr034c-dp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF13976: gag_pre-integrs
Ydr098c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr098c-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
none
Ydr170w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr210c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr210c-dp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
none
Ydr210w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr210w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
Pfam PF13976: gag_pre-integrs
Ydr261c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr261w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr261w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF13976: gag_pre-integrs
Ydr316w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr316w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
none
Ydr365w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ydr365w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Rad30p SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11076:SF9: GB DEF: DBH1P
PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain
Gene3D G3DSA:3.30.70.270: no description
Gene3D G3DSA:1.10.150.20: no description
Gene3D G3DSA:3.30.1490.100: no description
Pfam PF00817: IMS
Pfam PF11799: IMS_C
Ydr514cp SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
none
Yer137c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yer138cp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Yer159c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yer160cp Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Yfl002w-ap PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF13976: gag_pre-integrs
Yfl002w-bp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Rpo41p SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF00940: RNA_pol
Pfam PF14700: RPOL_N
Gene3D G3DSA:1.10.1320.10: no description
Gene3D G3DSA:1.10.287.260: no description
Gene3D G3DSA:3.30.70.370: no description
Gene3D G3DSA:1.10.287.280: no description
Gene3D G3DSA:1.10.150.20: no description
PANTHER PTHR10102: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL
Pan2p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF54001: Cysteine proteinases
SUPERFAMILY SSF50978: WD40 repeat-like
Pfam PF13423: UCH_1
Pfam PF00929: RNase_T
PANTHER PTHR15728:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR15728: UBIQUITIN SPECIFIC PROTEASE 52 / POLY(A) RIBONUCLEASE SUBUNIT PAN2
Gene3D G3DSA:2.130.10.10: no description
SMART SM00479: no description
Ygr027w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ygr027w-bp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
none
Ygr038c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ygr038c-bp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Ygr109w-bp SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
Pfam PF00665: rve
SUPERFAMILY SSF50630: Acid proteases
Gene3D G3DSA:3.10.10.10: no description
Gene3D G3DSA:3.30.70.270: no description
Pfam PF12384: Peptidase_A2B
Pfam PF00078: RVT_1
Pfam PF03732: Retrotrans_gag
SMART SM00343: zinc finger
PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN
PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN
Ygr161c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ygr161c-dp Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Ygr161w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ygr161w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF13976: gag_pre-integrs
Rnh70p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR12801:SF42: RNA EXONUCLEASE-RELATED
PANTHER PTHR12801: EXONUCLEASE
Pfam PF00929: RNase_T
SMART SM00479: no description
Yhl009w-ap PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
PANTHER PTHR11439:SF125: SUBFAMILY NOT NAMED
Yhl009w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Sfb3p SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR13803: SEC24-RELATED PROTEIN
Gene3D G3DSA:2.60.40.1670: no description
Gene3D G3DSA:3.40.50.410: no description
Gene3D G3DSA:3.40.20.10: no description
SUPERFAMILY SSF53300: vWA-like
SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24
SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24
SUPERFAMILY SSF81811: Helical domain of Sec23/24
Pfam PF04811: Sec23_trunk
Pfam PF04815: Sec23_helical
Pfam PF08033: Sec23_BS
Pfam PF04810: zf-Sec23_Sec24
Pfam PF00626: Gelsolin
Yhr214c-bp Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Yhr214c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yil080wp Gene3D G3DSA:3.30.420.10: no description
Pfam PF00665: rve
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.10.10.10: no description
Gene3D G3DSA:3.30.70.270: no description
Pfam PF12384: Peptidase_A2B
Pfam PF00078: RVT_1
Pfam PF03732: Retrotrans_gag
SUPERFAMILY SSF50630: Acid proteases
SMART SM00343: zinc finger
PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN
PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN
Yil082w-ap Gene3D G3DSA:3.30.420.10: no description
Pfam PF00665: rve
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.10.10.10: no description
Gene3D G3DSA:3.30.70.270: no description
Pfam PF12384: Peptidase_A2B
Pfam PF00078: RVT_1
Pfam PF03732: Retrotrans_gag
SUPERFAMILY SSF50630: Acid proteases
SMART SM00343: zinc finger
PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN
PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN
Sec24p SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.40.50.410: no description
Gene3D G3DSA:3.40.20.10: no description
Pfam PF04811: Sec23_trunk
Pfam PF04815: Sec23_helical
Pfam PF04810: zf-Sec23_Sec24
Pfam PF08033: Sec23_BS
Pfam PF00626: Gelsolin
SUPERFAMILY SSF53300: vWA-like
SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24
SUPERFAMILY SSF81811: Helical domain of Sec23/24
SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24
PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR13803: SEC24-RELATED PROTEIN
Mrs1p Gene3D G3DSA:3.30.420.10: no description
Pfam PF09159: Ydc2-catalyt
Yjl113wp Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Yjr026wp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yjr027wp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Yjr028wp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yjr029wp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Cce1p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
Pfam PF09159: Ydc2-catalyt
Ylr035c-ap Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
none
Rex2p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
Pfam PF00929: RNase_T
PANTHER PTHR11046: OLIGORIBONUCLEASE, MITOCHONDRIAL
SMART SM00479: no description
Rex3p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
PANTHER PTHR12801:SF42: RNA EXONUCLEASE-RELATED
PANTHER PTHR12801: EXONUCLEASE
Pfam PF00929: RNase_T
SMART SM00479: no description
Ylr157c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ylr157c-bp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
none
Ylr227w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ylr227w-bp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
none
Ylr256w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Vid22p SUPERFAMILY SSF53098: Ribonuclease H-like
none
Ylr410w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ylr410w-bp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF13976: gag_pre-integrs
Yml039wp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Yml040wp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yml045wp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
none
Yml045w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ymr045cp Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
none
Ymr046cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ymr050cp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Ymr051cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Rnh1p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
Pfam PF00075: RNase_H
Pfam PF01693: Cauli_VI
PIR superfamily PIRSF036852: Ribonuclease H1, eukaryotic type
SUPERFAMILY SSF55658: L9 N-domain-like
Gene3D G3DSA:3.40.970.10: no description
PANTHER PTHR10642: RIBONUCLEASE H1
Sfb2p SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:2.60.40.1670: no description
Gene3D G3DSA:3.40.50.410: no description
Gene3D G3DSA:3.40.20.10: no description
Pfam PF04811: Sec23_trunk
Pfam PF04815: Sec23_helical
Pfam PF08033: Sec23_BS
Pfam PF04810: zf-Sec23_Sec24
Pfam PF00626: Gelsolin
SUPERFAMILY SSF53300: vWA-like
SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24
SUPERFAMILY SSF81811: Helical domain of Sec23/24
SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24
PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR13803: SEC24-RELATED PROTEIN
Ynl054w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ynl054w-bp Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Rnh201p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
Gene3D G3DSA:1.10.10.460: no description
PANTHER PTHR10954:SF7: RIBONUCLEASE H2 SUBUNIT A
PANTHER PTHR10954: RIBONUCLEASE H2 SUBUNIT A
TIGRFAMs TIGR00729: TIGR00729: ribonuclease HII
Pfam PF01351: RNase_HII
Pol1p SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
SMART SM00486: DNA polymerase type-B family
Pfam PF00136: DNA_pol_B
Pfam PF08996: zf-DNA_Pol
Pfam PF03104: DNA_pol_B_exo1
Pfam PF12254: DNA_pol_alpha_N
TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2)
PANTHER PTHR10322:SF3: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT
PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT
Gene3D G3DSA:3.90.1600.10: no description
Gene3D G3DSA:1.10.287.690: no description
PRINTS PR00106: DNAPOLB
Pol2p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:1.10.287.690: no description
SMART SM00486: DNA polymerase type-B family
Pfam PF08490: DUF1744
Pfam PF03104: DNA_pol_B_exo1
Pfam PF00136: DNA_pol_B
PANTHER PTHR10670:SF0: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
PANTHER PTHR10670: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Ynl284c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ynl284c-bp Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Pop2p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR10797: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT
Pfam PF04857: CAF1
Rex4p SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR12801:SF5: RNA EXONUCLEASE 4
PANTHER PTHR12801: EXONUCLEASE
SMART SM00479: no description
Pfam PF00929: RNase_T
Yol103w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yol103w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
none
Rrp6p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SMART SM00474: 3'-5' exonuclease
SMART SM00341: Helicase and RNase D C-terminal
PANTHER PTHR12124:SF2: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
PANTHER PTHR12124: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
SUPERFAMILY SSF47819: HRDC-like
Pfam PF01612: DNA_pol_A_exo1
Pfam PF08066: PMC2NT
Pfam PF00570: HRDC
Yor142w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yor142w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Yor192c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yor192c-bp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Snf2p SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF00176: SNF2_N
Pfam PF00271: Helicase_C
Pfam PF00439: Bromodomain
Pfam PF14619: SnAC
Pfam PF08880: QLQ
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF47370: Bromodomain
Gene3D G3DSA:3.40.50.300: no description
Gene3D G3DSA:1.20.920.10: no description
PRINTS PR00503: BROMODOMAIN
SMART SM00951: no description
SMART SM00487: DEAD-like helicases superfamily
SMART SM00490: helicase superfamily c-terminal domain
SMART SM00297: bromo domain
PANTHER PTHR10799:SF209: GLOBAL TRANSCRIPTION ACTIVATOR SNF2L2 (ATP-DEPENDENT HELICASE SMARCA2)
PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED
Mip1p SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
PIR superfamily PIRSF000797: DNA-directed DNA polymerase, mitochondrial type
Gene3D G3DSA:3.30.70.370: no description
Gene3D G3DSA:1.10.150.20: no description
PRINTS PR00867: DNAPOLG
SMART SM00482: DNA polymerase A domain
PANTHER PTHR10267:SF0: DNA POLYMERASE SUBUNIT GAMMA-1
PANTHER PTHR10267: DNA POLYMERASE SUBUNIT GAMMA-1
Pfam PF00476: DNA_pol_A
Yor343w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Yor343w-bp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF13976: gag_pre-integrs
Rev1p SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF52113: BRCT domain
SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain
PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1
PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
Gene3D G3DSA:3.40.50.10190: no description
Gene3D G3DSA:3.30.70.270: no description
Gene3D G3DSA:1.10.150.20: no description
Gene3D G3DSA:3.30.1490.100: no description
Pfam PF00817: IMS
Pfam PF00533: BRCT
Pfam PF11799: IMS_C
PIR superfamily PIRSF036573: DNA repair protein, Rev1 type
SMART SM00292: breast cancer carboxy-terminal domain
Ypl060c-ap Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Rev3p Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF53098: Ribonuclease H-like
Gene3D G3DSA:3.90.1600.10: no description
Gene3D G3DSA:1.10.287.690: no description
PANTHER PTHR10322:SF5: DNA POLYMERASE ZETA CATALYTIC SUBUNIT
PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT
Pfam PF00136: DNA_pol_B
Pfam PF03104: DNA_pol_B_exo1
Pfam PF14260: zf-C4pol
PRINTS PR00106: DNAPOLB
SMART SM00486: DNA polymerase type-B family
Ypl257w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ypl257w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
none
Ypr137c-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ypr137c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
none
Ypr158c-cp Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ypr158c-dp SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Gene3D G3DSA:3.30.420.10: no description
none
Ypr158w-ap Pfam PF01021: TYA
PANTHER PTHR24894: FAMILY NOT NAMED
Ypr158w-bp Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
none
Sec23p SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
SUPERFAMILY SSF53300: vWA-like
SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24
SUPERFAMILY SSF81811: Helical domain of Sec23/24
SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24
Gene3D G3DSA:2.60.40.1670: no description
Gene3D G3DSA:3.40.50.410: no description
Gene3D G3DSA:3.40.20.10: no description
PANTHER PTHR11141: PROTEIN TRANSPORT PROTEIN SEC23
Pfam PF04811: Sec23_trunk
Pfam PF04815: Sec23_helical
Pfam PF08033: Sec23_BS
Pfam PF04810: zf-Sec23_Sec24
Pfam PF00626: Gelsolin
Ai1p SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)
PANTHER PTHR19446: REVERSE TRANSCRIPTASES
SMART SM00507: HNH nucleases
Pfam PF00078: RVT_1
Pfam PF01348: Intron_maturas2
Gene3D G3DSA:1.20.210.10: no description
SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like
Ai2p SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like
PRINTS PR01165: CYCOXIDASEI
SMART SM00507: HNH nucleases
Gene3D G3DSA:1.20.210.10: no description
PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)
PANTHER PTHR19446: REVERSE TRANSCRIPTASES
Pfam PF00078: RVT_1
Pfam PF01348: Intron_maturas2
Pfam PF00115: COX1

Unique domains/motifs


This table lists domains/motifs that are unique to Ydr261c-dp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ydr261c-dp domain/motif information see the external links section.

Last updated on 2013-12-16

There are no unique domains/motifs predicted for Ydr261c-dp .

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ydr261c-dp .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ydr261c-dp .


The following external links can be used to directly search external databases for domain/motif information for Ydr261c-dp .