YHL009W-A Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Yhl009w-ap domain/motif information see the external links section.

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Shared domains/motifs
Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)


This table lists proteins that share domains/motifs in common with those found in Yhl009w-ap , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yhl009w-ap domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Yhl009w-ap
Protein Motifs in common with Yhl009w-ap Other motifs in this protein (but not in Yhl009w-ap )
Yar009cp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
Ybl005w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
Ybl100w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Ybr012w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ycl019wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Ycl074wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF07727: RVT_2
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT)
Ycl075wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT)
Ydr034c-dp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Gene3D G3DSA:3.30.420.10: no description
Ydr098c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ydr210c-dp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
Ydr210w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Ydr261c-dp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ydr261w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Ydr316w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ydr365w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Yer138cp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Yer160cp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Yfl002w-ap PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Ygr027w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Ygr038c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ygr161c-dp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ygr161w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Gene3D G3DSA:3.30.420.10: no description
Yhl009w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Gene3D G3DSA:3.30.420.10: no description
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Yhr214c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Yjl113wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Yjr027wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Yjr029wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Ylr035c-ap PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10: no description
Ylr157c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ylr227w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ylr410w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Gene3D G3DSA:3.30.420.10: no description
Yml039wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Yml045wp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ymr045cp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Ymr050cp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ynl054w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ynl284c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Yol103w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Yor142w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Yor192c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Yor343w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Pfam PF13976: gag_pre-integrs
Ypl060c-ap PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 SUPERFAMILY SSF53098: Ribonuclease H-like
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
Ypl257w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ypr137c-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Ypr158c-dp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24
Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Ypr158w-bp PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON
 Pfam PF01021: TYA
Pfam PF07727: RVT_2
Pfam PF00665: rve
Gene3D G3DSA:3.30.420.10: no description
SUPERFAMILY SSF53098: Ribonuclease H-like
SUPERFAMILY SSF56672: DNA/RNA polymerases
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24

Unique domains/motifs
Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)


This table lists domains/motifs that are unique to Yhl009w-ap . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yhl009w-ap domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Yhl009w-ap
Database source Accession number Description
PANTHER PTHR11439:SF125 SUBFAMILY NOT NAMED

Transmembrane Domains
Jump to: top | Shared domains | Unique domains | Signal peptide(s)


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Yhl009w-ap .

Signal Peptide(s)
Jump to: top | Shared domains | Unique domains | Transmembrane domains


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Yhl009w-ap .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Yhl009w-ap .