BI3/Q0115 Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Bi3p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Bi3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bi3p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Bi3p
Protein	Motifs in common with Bi3p	Other motifs in this protein (but not in Bi3p )
Vma1p	SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description	SUPERFAMILY SSF51294: Hedgehog/intein (Hint) domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47917: C-terminal domain of alpha and beta subunits of F1 ATP synthase SUPERFAMILY SSF50615: N-terminal domain of alpha and beta subunits of F1 ATP synthase SMART SM00306: Hint (Hedgehog/Intein) domain N-terminal reg SMART SM00305: Hint (Hedgehog/Intein) domain C-terminal reg PRINTS PR00379: INTEIN Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:2.170.16.10: no description Gene3D G3DSA:1.10.1140.10: no description PANTHER PTHR15184:SF7: V-TYPE ATP SYNTHASE ALPHA CHAIN PANTHER PTHR15184: ATP SYNTHASE Pfam PF00006: ATP-synt_ab Pfam PF05203: Hom_end_hint Pfam PF05204: Hom_end Pfam PF00306: ATP-synt_ab_C Pfam PF02874: ATP-synt_ab_N
Hop	Gene3D G3DSA:3.10.28.10: no description SUPERFAMILY SSF55608: Homing endonucleases	Pfam PF05203: Hom_end_hint Pfam PF05204: Hom_end PRINTS PR00379: INTEIN Gene3D G3DSA:2.170.16.10: no description SMART SM00306: Hint (Hedgehog/Intein) domain N-terminal reg SUPERFAMILY SSF51294: Hedgehog/intein (Hint) domain PANTHER PTHR15184:SF15: SUBFAMILY NOT NAMED PANTHER PTHR15184: ATP SYNTHASE
Ai3p	Pfam PF00961: LAGLIDADG_1 SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description	PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 Pfam PF00115: COX1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like PRINTS PR01165: CYCOXIDASEI Gene3D G3DSA:1.20.210.10: no description
Ai4p	SUPERFAMILY SSF55608: Homing endonucleases Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:3.10.28.10: no description	PRINTS PR01165: CYCOXIDASEI PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Pfam PF00115: COX1 Gene3D G3DSA:1.20.210.10: no description
Ai5_alphap	SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description	Pfam PF00115: COX1 Pfam PF03161: LAGLIDADG_2 PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Gene3D G3DSA:1.20.210.10: no description PRINTS PR01165: CYCOXIDASEI
Ai5_betap	Gene3D G3DSA:3.10.28.10: no description Pfam PF00961: LAGLIDADG_1 SUPERFAMILY SSF55608: Homing endonucleases	none
Cobp	Pfam PF13631: Cytochrom_B_N_2 PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Gene3D G3DSA:1.20.810.10: no description SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes	Pfam PF00032: Cytochrom_B_C SUPERFAMILY SSF81648: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Bi2p	PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Gene3D G3DSA:1.20.810.10: no description Gene3D G3DSA:3.10.28.10: no description Pfam PF13631: Cytochrom_B_N_2 SUPERFAMILY SSF55608: Homing endonucleases SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes	Pfam PF03161: LAGLIDADG_2
Bi4p	SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes SUPERFAMILY SSF55608: Homing endonucleases PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Pfam PF13631: Cytochrom_B_N_2 Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:1.20.810.10: no description Gene3D G3DSA:3.10.28.10: no description	none
Sceip	SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description PANTHER PTHR19271: CYTOCHROME B	Pfam PF03161: LAGLIDADG_2
Q0255p	SUPERFAMILY SSF55608: Homing endonucleases Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:3.10.28.10: no description	Pfam PF07453: NUMOD1 SMART SM00497: Intron encoded nuclease repeat motif

Unique domains/motifs

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This table lists domains/motifs that are unique to Bi3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Bi3p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Bi3p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	33 - 55
	76 - 98
	113 - 135
	142 - 164
	184 - 206
	225 - 242

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 47

External Links

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The following external links can be used to directly search external databases for domain/motif information for Bi3p .