This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Cobp domain/motif information see the external links section.

Click on image for expanded interactive view

This table lists proteins that share domains/motifs in common with those found in Cobp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cobp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Cobp
Protein	Motifs in common with Cobp	Other motifs in this protein (but not in Cobp )
Bi2p	PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Gene3D G3DSA:1.20.810.10: no description Pfam PF13631: Cytochrom_B_N_2 SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes	Gene3D G3DSA:3.10.28.10: no description Pfam PF03161: LAGLIDADG_2 SUPERFAMILY SSF55608: Homing endonucleases
Bi3p	PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Pfam PF13631: Cytochrom_B_N_2 Gene3D G3DSA:1.20.810.10: no description SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes	Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:3.10.28.10: no description SUPERFAMILY SSF55608: Homing endonucleases
Bi4p	SUPERFAMILY SSF81342: Transmembrane di-heme cytochromes PANTHER PTHR19271:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19271: CYTOCHROME B Pfam PF13631: Cytochrom_B_N_2 Gene3D G3DSA:1.20.810.10: no description	SUPERFAMILY SSF55608: Homing endonucleases Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:3.10.28.10: no description
Sceip	PANTHER PTHR19271: CYTOCHROME B	SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description Pfam PF03161: LAGLIDADG_2

This table lists domains/motifs that are unique to Cobp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cobp domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Cobp
Database source	Accession number	Description
Pfam	PF00032	Cytochrom_B_C
SUPERFAMILY	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)
	33 - 55
	76 - 98
	113 - 135
	142 - 164
	179 - 201
	224 - 246
	289 - 307
	320 - 342
	357 - 379

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)
	1 - 47

The following external links can be used to directly search external databases for domain/motif information for Cobp .