COX1/Q0045 Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Cox1p domain/motif information see the external links section.

Proteome Browser

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Cox1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cox1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Cox1p
Protein	Motifs in common with Cox1p	Other motifs in this protein (but not in Cox1p )
Ai1p	Gene3D G3DSA:1.20.210.10: no description SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like	SMART SM00507: HNH nucleases PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2
Ai2p	PRINTS PR01165: CYCOXIDASEI Gene3D G3DSA:1.20.210.10: no description Pfam PF00115: COX1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like	PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES SMART SM00507: HNH nucleases Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2 SUPERFAMILY SSF56672: DNA/RNA polymerases
Ai3p	PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 Pfam PF00115: COX1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like PRINTS PR01165: CYCOXIDASEI Gene3D G3DSA:1.20.210.10: no description	Pfam PF00961: LAGLIDADG_1 SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description
Ai4p	PRINTS PR01165: CYCOXIDASEI PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Pfam PF00115: COX1 Gene3D G3DSA:1.20.210.10: no description	SUPERFAMILY SSF55608: Homing endonucleases Pfam PF00961: LAGLIDADG_1 Gene3D G3DSA:3.10.28.10: no description
Ai5_alphap	Pfam PF00115: COX1 PANTHER PTHR10422: CYTOCHROME C OXIDASE SUBUNIT 1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Gene3D G3DSA:1.20.210.10: no description PRINTS PR01165: CYCOXIDASEI	Pfam PF03161: LAGLIDADG_2 SUPERFAMILY SSF55608: Homing endonucleases Gene3D G3DSA:3.10.28.10: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Cox1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cox1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Cox1p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	16 - 38
	58 - 80
	101 - 123
	148 - 170
	183 - 205
	237 - 259
	266 - 288
	303 - 325
	337 - 359
	374 - 396
	409 - 431
	451 - 473

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 33

External Links

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The following external links can be used to directly search external databases for domain/motif information for Cox1p .