CLB2/YPR119W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Clb2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Clb2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Clb2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Clb2p
Protein	Motifs in common with Clb2p	Other motifs in this protein (but not in Clb2p )
Cln3p	PANTHER PTHR10177: CYCLINE SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like Pfam PF00134: Cyclin_N	PANTHER PTHR10177:SF40: SUBFAMILY NOT NAMED
Rmd1p	SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR16255:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16255: UNCHARACTERIZED Pfam PF02582: DUF155
Pcl2p	Pfam PF00134: Cyclin_N SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type
Clb3p	Gene3D G3DSA:1.10.472.10: no description PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	none
Pcl9p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Pfam PF00134: Cyclin_N Gene3D G3DSA:1.10.472.10: no description	PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED
Clb1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description PIR superfamily PIRSF001771: Cyclin, A/B/D/E types	none
Clb6p	Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description PIR superfamily PIRSF001771: Cyclin, A/B/D/E types SMART SM00385: domain present in cyclins, TFIIB and Retinob	none
Brf1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PRINTS PR00685: TIFACTORIIB Gene3D G3DSA:2.20.25.10: no description Gene3D G3DSA:1.20.5.650: no description Pfam PF00382: TFIIB Pfam PF07741: BRF1 Pfam PF08271: TF_Zn_Ribbon PANTHER PTHR11618:SF4: TRANSCRIPTION FACTOR IIIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED SUPERFAMILY SSF57783: Zinc beta-ribbon
Pcl5p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF08613: Cyclin
Ctk2p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N	PANTHER PTHR10026:SF4: GB DEF: CTD KINASE BETA SUBUNIT (CTD KINASE 38 KDA SUBUNIT) (CTDK-I BETA SUBUNIT) PANTHER PTHR10026: CYCLIN
Clb4p	PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PIR superfamily PIRSF001771: Cyclin, A/B/D/E types	none
Bur2p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	none
Cln1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob PANTHER PTHR10177: CYCLINE SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description Pfam PF00134: Cyclin_N	PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN
Ssn8p	Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	PANTHER PTHR10026:SF47: RNA POLYMERASE II HOLOENZYME CYCLIN-LIKE SUBUNIT PANTHER PTHR10026: CYCLIN PIR superfamily PIRSF028758: Cyclin, C/H/G types
Pcl1p	Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob PANTHER PTHR10177: CYCLINE	PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type PANTHER PTHR10177:SF85: SUBFAMILY NOT NAMED
Cln2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like PANTHER PTHR10177: CYCLINE Pfam PF00134: Cyclin_N Gene3D G3DSA:1.10.472.10: no description	PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types
Ccl1p	SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N Gene3D G3DSA:1.10.472.10: no description	PANTHER PTHR10026:SF8: CYCLIN H PANTHER PTHR10026: CYCLIN TIGRFAMs TIGR00569: ccl1: cyclin ccl1
Sua7p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	Gene3D G3DSA:2.20.25.10: no description SUPERFAMILY SSF57783: Zinc beta-ribbon PRINTS PR00685: TIFACTORIIB PANTHER PTHR11618:SF13: TRANSCRIPTION INITIATION FACTOR IIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED Pfam PF00382: TFIIB Pfam PF08271: TF_Zn_Ribbon
Clb5p	SMART SM00385: domain present in cyclins, TFIIB and Retinob PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE Gene3D G3DSA:1.10.472.10: no description PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C SUPERFAMILY SSF47954: Cyclin-like	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Clb2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Clb2p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Clb2p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Clb2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Clb2p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Clb2p .