APM1/YPL259C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Apm1p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Apm1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Apm1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Apm1p
Protein	Motifs in common with Apm1p	Other motifs in this protein (but not in Apm1p )
Trs20p	SUPERFAMILY SSF64356: SNARE-like	Gene3D G3DSA:3.30.450.70: no description Pfam PF04628: Sedlin_N PANTHER PTHR12403:SF1: MBP-1 INTERACTING PROTEIN-2A PANTHER PTHR12403: MBP-1 INTERACTING PROTEIN-2A
Apm3p	SUPERFAMILY SSF49447: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor Pfam PF00928: Adap_comp_sub PANTHER PTHR11998: CLATHRIN COAT ASSEMBLY PROTEIN Gene3D G3DSA:2.60.40.1170: no description	PANTHER PTHR11998:SF3: YEAST ADAPTIN MEDIUM CHAIN APM3-RELATED
Trs23p	SUPERFAMILY SSF64356: SNARE-like	PANTHER PTHR23249:SF2: SYNBINDIN PANTHER PTHR23249: SYNBINDIN Gene3D G3DSA:3.30.450.70: no description Pfam PF04099: Sybindin
Srp101p	SUPERFAMILY SSF64356: SNARE-like Gene3D G3DSA:3.30.450.60: no description	Pfam PF09201: SRX Pfam PF00448: SRP54 Pfam PF02881: SRP54_N SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47364: Domain of the SRP/SRP receptor G-proteins Gene3D G3DSA:1.20.120.140: no description Gene3D G3DSA:3.40.50.300: no description SMART SM00963: SRP54-type protein, helical bundle domain SMART SM00382: ATPases associated with a variety of cellula SMART SM00962: SRP54-type protein, GTPase domain PANTHER PTHR11564:SF8: SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA) PANTHER PTHR11564: GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS
Tca17p	SUPERFAMILY SSF64356: SNARE-like	Pfam PF04628: Sedlin_N Gene3D G3DSA:3.30.450.70: no description
Ret2p	Pfam PF01217: Clat_adaptor_s Pfam PF00928: Adap_comp_sub SUPERFAMILY SSF64356: SNARE-like SUPERFAMILY SSF49447: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor Gene3D G3DSA:3.30.450.60: no description	PANTHER PTHR10121:SF0: COATOMER SUBUNIT DELTA PANTHER PTHR10121: COATOMER SUBUNIT DELTA
Apm2p	SUPERFAMILY SSF49447: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor SUPERFAMILY SSF64356: SNARE-like Pfam PF00928: Adap_comp_sub Gene3D G3DSA:3.30.450.60: no description Gene3D G3DSA:2.60.40.1170: no description PANTHER PTHR11998: CLATHRIN COAT ASSEMBLY PROTEIN	PANTHER PTHR11998:SF5: YEAST ADAPTIN MEDIUM CHAIN APM2-RELATED
Aps3p	Gene3D G3DSA:3.30.450.60: no description Pfam PF01217: Clat_adaptor_s SUPERFAMILY SSF64356: SNARE-like	PANTHER PTHR11753:SF2: ADAPTOR-RELATED PROTEIN COMPLEX 3 PANTHER PTHR11753: CLATHRIN COAT ASSEMBLY PROTEIN PIR superfamily PIRSF015588: Adaptor protein complex, sigma subunit
Aps2p	SUPERFAMILY SSF64356: SNARE-like Gene3D G3DSA:3.30.450.60: no description Pfam PF01217: Clat_adaptor_s	PANTHER PTHR11753:SF6: CLATHRIN COAT ASSEMBLY PROTEIN AP17 PANTHER PTHR11753: CLATHRIN COAT ASSEMBLY PROTEIN PIR superfamily PIRSF015588: Adaptor protein complex, sigma subunit
Ykt6p	SUPERFAMILY SSF64356: SNARE-like	PRINTS PR00219: SYNAPTOBREVN PANTHER PTHR21136:SF5: SNARE PROTEIN YKT6 PANTHER PTHR21136: SNARE PROTEINS Gene3D G3DSA:3.30.450.50: no description Gene3D G3DSA:1.20.5.110: no description Pfam PF13774: Longin Pfam PF00957: Synaptobrevin
Aps1p	SUPERFAMILY SSF64356: SNARE-like Gene3D G3DSA:3.30.450.60: no description Pfam PF01217: Clat_adaptor_s	PANTHER PTHR11753:SF5: CLATHRIN ASSEMBLY PROTEIN AP19 PANTHER PTHR11753: CLATHRIN COAT ASSEMBLY PROTEIN PIR superfamily PIRSF015588: Adaptor protein complex, sigma subunit
Sec22p	SUPERFAMILY SSF64356: SNARE-like	PANTHER PTHR21136:SF4: SNARE PROTEIN SEC22 PANTHER PTHR21136: SNARE PROTEINS Pfam PF13774: Longin Pfam PF00957: Synaptobrevin Gene3D G3DSA:3.30.450.50: no description Gene3D G3DSA:1.10.3840.10: no description
Bet5p	SUPERFAMILY SSF64356: SNARE-like	Pfam PF04099: Sybindin PANTHER PTHR23249:SF9: TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 PANTHER PTHR23249: SYNBINDIN Gene3D G3DSA:3.30.450.70: no description
Apm4p	PANTHER PTHR11998: CLATHRIN COAT ASSEMBLY PROTEIN SUPERFAMILY SSF49447: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor SUPERFAMILY SSF64356: SNARE-like Pfam PF00928: Adap_comp_sub Gene3D G3DSA:3.30.450.60: no description Gene3D G3DSA:2.60.40.1170: no description PIR superfamily PIRSF005992: Adaptor protein complex, mu subunit	PANTHER PTHR11998:SF10: YEAST ADAPTIN MEDIUM CHAIN APM4-RELATED
Ret3p	Pfam PF01217: Clat_adaptor_s Gene3D G3DSA:3.30.450.60: no description SUPERFAMILY SSF64356: SNARE-like	PANTHER PTHR11043:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11043: ZETA-COAT PROTEIN

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Apm1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Apm1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Apm1p
Database source	Accession number	Description
PRINTS	PR00314	CLATHRINADPT
PANTHER	PTHR11998:SF11	CLATHRIN COAT ASSEMBLY PROTEIN AP-1

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Apm1p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Apm1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Apm1p .