This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpl5p domain/motif information see the external links section.

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This table lists proteins that share domains/motifs in common with those found in Rpl5p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl5p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl5p
Protein	Motifs in common with Rpl5p	Other motifs in this protein (but not in Rpl5p )
Sup45p	SUPERFAMILY SSF53137: Translational machinery components	SUPERFAMILY SSF55481: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 SUPERFAMILY SSF55315: L30e-like Pfam PF03464: eRF1_2 Pfam PF03465: eRF1_3 Pfam PF03463: eRF1_1 PANTHER PTHR10113: PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 Gene3D G3DSA:3.30.960.10: no description Gene3D G3DSA:3.30.420.60: no description Gene3D G3DSA:3.30.1330.30: no description TIGRFAMs TIGR03676: aRF1/eRF1: peptide chain release factor 1, archaea
Rps14ap	SUPERFAMILY SSF53137: Translational machinery components	PIR superfamily PIRSF002131: Ribosomal protein, S11p/S11a/S14e/organellar S11 types PANTHER PTHR11759:SF1: 40S RIBOSOMAL PROTEIN S14 PANTHER PTHR11759: 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 Pfam PF00411: Ribosomal_S11 Gene3D G3DSA:3.30.420.80: no description
Rps14bp	SUPERFAMILY SSF53137: Translational machinery components	PIR superfamily PIRSF002131: Ribosomal protein, S11p/S11a/S14e/organellar S11 types PANTHER PTHR11759:SF1: 40S RIBOSOMAL PROTEIN S14 PANTHER PTHR11759: 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 Gene3D G3DSA:3.30.420.80: no description Pfam PF00411: Ribosomal_S11
Mrps18p	SUPERFAMILY SSF53137: Translational machinery components	Pfam PF00411: Ribosomal_S11 PANTHER PTHR11759:SF6: SUBFAMILY NOT NAMED PANTHER PTHR11759: 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 Gene3D G3DSA:3.30.420.80: no description

This table lists domains/motifs that are unique to Rpl5p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl5p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpl5p
Database source	Accession number	Description
PRINTS	PR00058	RIBOSOMALL5
Gene3D	G3DSA:3.30.420.100	no description
PANTHER	PTHR23410	RIBOSOMAL PROTEIN L5-RELATED
PANTHER	PTHR23410:SF8	SUBFAMILY NOT NAMED
Pfam	PF00861	Ribosomal_L18p
Pfam	PF14204	Ribosomal_L18_c

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

The following external links can be used to directly search external databases for domain/motif information for Rpl5p .