RPL21B/YPL079W Domains/Motifs and Signal Peptides 
To directly search external databases for Rpl21bp domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Rpl21bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpl21bp domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl21bp | ||
|---|---|---|
| Protein | Motifs in common with Rpl21bp | Other motifs in this protein (but not in Rpl21bp ) |
| Rpl21ap | SUPERFAMILY SSF50104: Translation proteins SH3-like domain PANTHER PTHR20981:SF0: SUBFAMILY NOT NAMED PANTHER PTHR20981: 60S RIBOSOMAL PROTEIN L21 Gene3D G3DSA:2.30.30.70: no description Pfam PF01157: Ribosomal_L21e |
none |
| Img1p | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
Pfam PF01245: Ribosomal_L19 PANTHER PTHR15680:SF4: SUBFAMILY NOT NAMED PANTHER PTHR15680: RIBOSOMAL PROTEIN L19 |
| Hyp2p | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A Pfam PF01287: eIF-5a Pfam PF00467: KOW PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF003025: Translation initiation factor eIF-5A |
| Rml2p | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 PANTHER PTHR13691:SF5: 50S RIBOSOMAL PROTEIN L2 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 TIGRFAMs TIGR01171: rplB_bact: ribosomal protein L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
| Rpl2ap | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types |
| Rpl26bp | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
Pfam PF00467: KOW TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER |
| Rpl2bp | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description |
| Anb1p | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A PIR superfamily PIRSF003025: Translation initiation factor eIF-5A PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins Pfam PF01287: eIF-5a Pfam PF00467: KOW |
| Rpl26ap | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER Pfam PF00467: KOW |
| Spt5p | SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
Pfam PF03439: Spt5-NGN Pfam PF11942: Spt5_N Pfam PF00467: KOW PANTHER PTHR11125:SF7: SUBFAMILY NOT NAMED PANTHER PTHR11125: SUPPRESSOR OF TY 5 SMART SM00738: In Spt5p, this domain may confer affinity fo SMART SM00739: KOW (Kyprides, Ouzounis, Woese) motif. SMART SM01104: Spt5 C-terminal nonapeptide repeat binding S PIR superfamily PIRSF036945: Transcription elongation factor Spt5 |
This table lists domains/motifs that are unique to Rpl21bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpl21bp domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Rpl21bp .
