RAD1/YPL022W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rad1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rad1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rad1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rad1p
Protein	Motifs in common with Rad1p	Other motifs in this protein (but not in Rad1p )
Mms4p	SMART SM00891: ERCC4 domain	none
Mus81p	SUPERFAMILY SSF52980: Restriction endonuclease-like Gene3D G3DSA:3.40.50.10130: no description SMART SM00891: ERCC4 domain	PANTHER PTHR13451: CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 Pfam PF02732: ERCC4
Rad10p	SUPERFAMILY SSF52980: Restriction endonuclease-like	ProDom PD013585: RAD10_YEAST_P06838; PANTHER PTHR12749:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12749: EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1 TIGRFAMs TIGR00597: rad10: DNA repair protein rad10 Pfam PF03834: Rad10

Unique domains/motifs

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This table lists domains/motifs that are unique to Rad1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rad1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rad1p
Database source	Accession number	Description
PANTHER	PTHR10150	DNA REPAIR ENDONUCLEASE XPF
TIGRFAMs	TIGR00596	rad1: DNA repair protein (rad1)
SUPERFAMILY	SSF47781	RuvA domain 2-like

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rad1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rad1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rad1p .