RPA43/YOR340C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpa43p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpa43p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpa43p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpa43p
Protein	Motifs in common with Rpa43p	Other motifs in this protein (but not in Rpa43p )
Rpb7p	Pfam PF03876: SHS2_Rpb7-N	SMART SM00316: Ribosomal protein S1-like RNA-binding domain Gene3D G3DSA:3.30.1490.120: no description Gene3D G3DSA:2.40.50.140: no description Pfam PF00575: S1 SUPERFAMILY SSF88798: N-terminal, heterodimerisation domain of RBP7 (RpoE) SUPERFAMILY SSF50249: Nucleic acid-binding proteins PANTHER PTHR12709: DNA-DIRECTED RNA POLYMERASE II, III
Rpc25p	Pfam PF03876: SHS2_Rpb7-N	TIGRFAMs TIGR00448: rpoE: DNA-directed RNA polymerase Pfam PF08292: RNA_pol_Rbc25 Gene3D G3DSA:3.30.1490.120: no description SUPERFAMILY SSF88798: N-terminal, heterodimerisation domain of RBP7 (RpoE) SUPERFAMILY SSF50249: Nucleic acid-binding proteins PANTHER PTHR12709:SF2: DNA-DIRECTED RNA POLYMERASE III 25 KD POLYPEPTIDE PANTHER PTHR12709: DNA-DIRECTED RNA POLYMERASE II, III

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpa43p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpa43p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rpa43p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpa43p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpa43p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rpa43p .