PUS7/YOR243C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Pus7p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Pus7p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pus7p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Pus7p
Protein	Motifs in common with Pus7p	Other motifs in this protein (but not in Pus7p )
Pus9p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN TIGRFAMs TIGR00005: rluA_subfam: pseudouridine synthase, RluA family Pfam PF00849: PseudoU_synth_2
Deg1p	SUPERFAMILY SSF55120: Pseudouridine synthase	Pfam PF01416: PseudoU_synth_1 PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description
Pus2p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description Pfam PF01416: PseudoU_synth_1 TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase
Pus6p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2
Pus5p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF49: SUBFAMILY NOT NAMED PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2
Cbf5p	SUPERFAMILY SSF55120: Pseudouridine synthase	Gene3D G3DSA:2.30.130.10: no description SMART SM00359: Putative RNA-binding Domain in PseudoUridine SUPERFAMILY SSF88697: PUA domain-like TIGRFAMs TIGR00425: CBF5: putative rRNA pseudouridine synthase TIGRFAMs TIGR00451: unchar_dom_2: uncharacterized domain 2 PANTHER PTHR23127: CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 Pfam PF08068: DKCLD Pfam PF01509: TruB_N Pfam PF01472: PUA
Pus4p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR13767:SF2: TRNA PSEUDOURIDINE SYNTHASE B PANTHER PTHR13767: TRNA-PSEUDOURIDINE SYNTHASE Pfam PF01509: TruB_N
Rib2p	SUPERFAMILY SSF55120: Pseudouridine synthase	TIGRFAMs TIGR00005: rluA_subfam: pseudouridine synthase, RluA family Gene3D G3DSA:3.40.140.10: no description SUPERFAMILY SSF53927: Cytidine deaminase-like PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2 Pfam PF00383: dCMP_cyt_deam_1
Pus1p	SUPERFAMILY SSF55120: Pseudouridine synthase	Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase Pfam PF01416: PseudoU_synth_1 PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE

Unique domains/motifs

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This table lists domains/motifs that are unique to Pus7p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pus7p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Pus7p
Database source	Accession number	Description
PIR superfamily	PIRSF037016	Predicted pseudouridine synthase, eukaryotic type
PANTHER	PTHR13326	TRNA PSEUDOURIDINE SYNTHASE D
Pfam	PF01142	TruD
TIGRFAMs	TIGR00094	tRNA_TruD_broad: tRNA pseudouridine synthase, TruD

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Pus7p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Pus7p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Pus7p .