RPB2/YOR151C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpb2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpb2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpb2p
Protein	Motifs in common with Rpb2p	Other motifs in this protein (but not in Rpb2p )
Rpo21p	SUPERFAMILY SSF64484: beta and beta-prime subunits of DNA dependent RNA-polymerase	Pfam PF04997: RNA_pol_Rpb1_1 Pfam PF04998: RNA_pol_Rpb1_5 Pfam PF00623: RNA_pol_Rpb1_2 Pfam PF04992: RNA_pol_Rpb1_6 Pfam PF04983: RNA_pol_Rpb1_3 Pfam PF04990: RNA_pol_Rpb1_7 Pfam PF05000: RNA_pol_Rpb1_4 Pfam PF05001: RNA_pol_Rpb1_R Gene3D G3DSA:2.40.40.20: no description Gene3D G3DSA:3.30.1490.180: no description PANTHER PTHR19376:SF14: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT PANTHER PTHR19376: DNA-DIRECTED RNA POLYMERASE SMART SM00663: RNA polymerase I subunit A N-terminus PRINTS PR01217: PRICHEXTENSN
Rpo31p	SUPERFAMILY SSF64484: beta and beta-prime subunits of DNA dependent RNA-polymerase	SMART SM00663: RNA polymerase I subunit A N-terminus Pfam PF04998: RNA_pol_Rpb1_5 Pfam PF04997: RNA_pol_Rpb1_1 Pfam PF00623: RNA_pol_Rpb1_2 Pfam PF04983: RNA_pol_Rpb1_3 Pfam PF05000: RNA_pol_Rpb1_4 Gene3D G3DSA:2.40.40.20: no description Gene3D G3DSA:3.30.1490.180: no description PANTHER PTHR19376:SF15: DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT PANTHER PTHR19376: DNA-DIRECTED RNA POLYMERASE
Ret1p	Pfam PF00562: RNA_pol_Rpb2_6 Pfam PF04563: RNA_pol_Rpb2_1 Pfam PF04561: RNA_pol_Rpb2_2 Pfam PF04560: RNA_pol_Rpb2_7 Pfam PF04566: RNA_pol_Rpb2_4 Pfam PF04565: RNA_pol_Rpb2_3 Pfam PF04567: RNA_pol_Rpb2_5 PANTHER PTHR20856: DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 SUPERFAMILY SSF64484: beta and beta-prime subunits of DNA dependent RNA-polymerase Gene3D G3DSA:3.90.1100.10: no description Gene3D G3DSA:3.90.1110.10: no description Gene3D G3DSA:2.40.270.10: no description Gene3D G3DSA:2.40.50.150: no description	PANTHER PTHR20856:SF8: DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2
Rpa190p	SUPERFAMILY SSF64484: beta and beta-prime subunits of DNA dependent RNA-polymerase	Pfam PF04998: RNA_pol_Rpb1_5 Pfam PF00623: RNA_pol_Rpb1_2 Pfam PF04983: RNA_pol_Rpb1_3 Pfam PF05000: RNA_pol_Rpb1_4 Pfam PF04997: RNA_pol_Rpb1_1 Gene3D G3DSA:2.40.40.20: no description Gene3D G3DSA:3.30.1490.180: no description SMART SM00663: RNA polymerase I subunit A N-terminus PANTHER PTHR19376:SF11: DNA-DIRECTED RNA POLYMERASE I LARGEST SUBUNIT PANTHER PTHR19376: DNA-DIRECTED RNA POLYMERASE
Rpa135p	SUPERFAMILY SSF64484: beta and beta-prime subunits of DNA dependent RNA-polymerase PANTHER PTHR20856: DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 Gene3D G3DSA:3.90.1100.10: no description Gene3D G3DSA:3.90.1110.10: no description Gene3D G3DSA:2.40.270.10: no description Gene3D G3DSA:2.40.50.150: no description Pfam PF00562: RNA_pol_Rpb2_6 Pfam PF04563: RNA_pol_Rpb2_1 Pfam PF04561: RNA_pol_Rpb2_2 Pfam PF04565: RNA_pol_Rpb2_3 Pfam PF04560: RNA_pol_Rpb2_7 Pfam PF04567: RNA_pol_Rpb2_5	PANTHER PTHR20856:SF5: DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 Pfam PF06883: RNA_pol_Rpa2_4

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpb2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb2p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpb2p
Database source	Accession number	Description
PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT 2

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpb2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpb2p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rpb2p .