RPL3/YOR063W Domains/Motifs and Signal Peptides 
To directly search external databases for Rpl3p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Rpl3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpl3p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl3p | ||
|---|---|---|
| Protein | Motifs in common with Rpl3p | Other motifs in this protein (but not in Rpl3p ) |
| Fun12p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF52156: Initiation factor IF2/eIF5b, domain 3 PANTHER PTHR23115:SF41: TRANSLATION INITIATION FACTOR IF-2 PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.40.50.10050: no description PRINTS PR00315: ELONGATNFCT Pfam PF00009: GTP_EFTU Pfam PF11987: IF-2 Pfam PF03144: GTP_EFTU_D2 |
| Tef2p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
TIGRFAMs TIGR00483: EF-1_alpha: translation elongation factor EF-1, su PANTHER PTHR23115:SF37: ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Pfam PF00009: GTP_EFTU Pfam PF03143: GTP_EFTU_D3 Pfam PF03144: GTP_EFTU_D2 PRINTS PR00315: ELONGATNFCT |
| Slm3p | Gene3D G3DSA:2.40.30.10: no description |
TIGRFAMs TIGR00420: trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-m Gene3D G3DSA:3.40.50.620: no description Gene3D G3DSA:2.30.30.280: no description SUPERFAMILY SSF52402: Adenine nucleotide alpha hydrolases-like PANTHER PTHR11933: TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE Pfam PF03054: tRNA_Me_trans |
| Sup35p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
Pfam PF00009: GTP_EFTU Pfam PF03143: GTP_EFTU_D3 Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain PANTHER PTHR23115:SF36: EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT (ERF2) (TRANSLATION RELEASE FACTOR 3) (ERF3) (ERF-3) PANTHER PTHR23115: TRANSLATION FACTOR PRINTS PR01343: YEASTERF PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description |
| Eft2p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF54980: EF-G C-terminal domain-like TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT |
| Gcd11p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain PRINTS PR00315: ELONGATNFCT PANTHER PTHR23115:SF9: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT (EIF-2- GAMMA) PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Pfam PF00009: GTP_EFTU Pfam PF09173: eIF2_C Pfam PF03144: GTP_EFTU_D2 |
| Met10p | Gene3D G3DSA:2.40.30.10: no description |
Gene3D G3DSA:3.40.50.920: no description Gene3D G3DSA:3.40.920.10: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description SUPERFAMILY SSF63380: Riboflavin synthase domain-like SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF53323: Pyruvate-ferredoxin oxidoreductase, PFOR, domain III SUPERFAMILY SSF52922: TK C-terminal domain-like PRINTS PR00371: FPNCR Pfam PF00667: FAD_binding_1 Pfam PF00175: NAD_binding_1 PANTHER PTHR19384:SF16: SULFITE REDUCTASE PANTHER PTHR19384: FLAVODOXIN-RELATED |
| Mrpl9p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description Pfam PF00297: Ribosomal_L3 |
PANTHER PTHR11229: 50S RIBOSOMAL PROTEIN L3 Gene3D G3DSA:4.10.960.10: no description TIGRFAMs TIGR03625: L3_bact: 50S ribosomal protein L3 |
| Yhb1p | Gene3D G3DSA:2.40.30.10: no description |
Gene3D G3DSA:1.10.490.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00970: FAD_binding_6 Pfam PF00042: Globin Pfam PF00175: NAD_binding_1 SUPERFAMILY SSF46458: Globin-like SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like PANTHER PTHR22924: LEGHEMOGLOBIN-RELATED |
| Ncp1p | Gene3D G3DSA:2.40.30.10: no description |
PANTHER PTHR19384: FLAVODOXIN-RELATED SUPERFAMILY SSF63380: Riboflavin synthase domain-like SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF52218: Flavoproteins Gene3D G3DSA:3.40.50.360: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00667: FAD_binding_1 Pfam PF00258: Flavodoxin_1 Pfam PF00175: NAD_binding_1 PRINTS PR00371: FPNCR PRINTS PR00369: FLAVODOXIN |
| Gar1p | SUPERFAMILY SSF50447: Translation proteins |
Pfam PF04410: Gar1 PANTHER PTHR23237: NUCLEOLAR PROTEIN FAMILY A MEMBER 1 (SNORNP PROTEIN GAR1) Gene3D G3DSA:2.40.10.230: no description ProDom PD020235: GAR1_YEAST_P28007; |
| Cbr1p | Gene3D G3DSA:2.40.30.10: no description |
PANTHER PTHR19370:SF6: GB DEF: PUTATIVE NADH-CYTOCHROME B5 REDUCTASE (EC 1.6.2.2) (P35) PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE Gene3D G3DSA:3.40.50.80: no description PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR Pfam PF00175: NAD_binding_1 Pfam PF00970: FAD_binding_6 SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like |
| Mef2p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
SMART SM00838: Elongation factor G C-terminus PANTHER PTHR23115:SF13: TRANSLATION ELONGATION FACTOR G PANTHER PTHR23115: TRANSLATION FACTOR TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like Pfam PF00009: GTP_EFTU Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description PRINTS PR00315: ELONGATNFCT |
| Mcr1p | Gene3D G3DSA:2.40.30.10: no description |
Gene3D G3DSA:3.40.50.80: no description Pfam PF00175: NAD_binding_1 Pfam PF00970: FAD_binding_6 SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like PANTHER PTHR19370:SF8: SUBFAMILY NOT NAMED PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR |
| Snu114p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description PANTHER PTHR23115:SF2: TRANSLATION ELONGATION FACTOR 2-RELATED PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF54980: EF-G C-terminal domain-like SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus Pfam PF00009: GTP_EFTU Pfam PF03144: GTP_EFTU_D2 Pfam PF03764: EFG_IV Pfam PF00679: EFG_C |
| Fre2p | Gene3D G3DSA:2.40.30.10: no description |
Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct Gene3D G3DSA:3.40.50.80: no description SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like PANTHER PTHR32361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32361: FAMILY NOT NAMED |
| Hbs1p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
PRINTS PR00315: ELONGATNFCT PANTHER PTHR23115:SF38: EUKARYOTIC RELEASE FACTOR 3-RELATED (ERFS) (HBS1-LIKE) PANTHER PTHR23115: TRANSLATION FACTOR Pfam PF00009: GTP_EFTU Pfam PF03144: GTP_EFTU_D2 Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| Mef1p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF54980: EF-G C-terminal domain-like PANTHER PTHR23115:SF66: SUBFAMILY NOT NAMED PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT TIGRFAMs TIGR00484: EF-G: translation elongation factor G TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Guf1p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
PRINTS PR00315: ELONGATNFCT SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like TIGRFAMs TIGR01393: lepA: GTP-binding protein LepA TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain PANTHER PTHR23115:SF40: GTP-BINDING PROTEIN LEPA PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF06421: LepA_C Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 |
| Aim33p | Gene3D G3DSA:2.40.30.10: no description |
Pfam PF00970: FAD_binding_6 Pfam PF00175: NAD_binding_1 Gene3D G3DSA:3.40.50.80: no description PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR PANTHER PTHR19370:SF12: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like |
| Pga3p | Gene3D G3DSA:2.40.30.10: no description |
SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like PRINTS PR00406: CYTB5RDTASE PRINTS PR00371: FPNCR Pfam PF00970: FAD_binding_6 Pfam PF00175: NAD_binding_1 Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR19370:SF12: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR19370: NADH-CYTOCHROME B5 REDUCTASE |
| Naf1p | SUPERFAMILY SSF50447: Translation proteins |
Pfam PF04410: Gar1 Gene3D G3DSA:2.40.10.230: no description PANTHER PTHR31633:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31633: FAMILY NOT NAMED |
| Ria1p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF54980: EF-G C-terminal domain-like PANTHER PTHR23115:SF3: TRANSLATION ELONGATION FACTOR PANTHER PTHR23115: TRANSLATION FACTOR PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Ifm1p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.40.50.10050: no description TIGRFAMs TIGR00487: IF-2: translation initiation factor IF-2 TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain Pfam PF00009: GTP_EFTU Pfam PF11987: IF-2 Pfam PF04760: IF2_N PANTHER PTHR23115:SF41: TRANSLATION INITIATION FACTOR IF-2 PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF52156: Initiation factor IF2/eIF5b, domain 3 |
| Fre7p | Gene3D G3DSA:2.40.30.10: no description |
Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR11972:SF14: SUBFAMILY NOT NAMED PANTHER PTHR11972: NADPH OXIDASE Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct SUPERFAMILY SSF63380: Riboflavin synthase domain-like |
| Cyc2p | Gene3D G3DSA:2.40.30.10: no description |
Pfam PF00970: FAD_binding_6 Gene3D G3DSA:3.40.50.80: no description SUPERFAMILY SSF63380: Riboflavin synthase domain-like |
| Eft1p | Gene3D G3DSA:2.40.30.10: no description SUPERFAMILY SSF50447: Translation proteins |
SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description PRINTS PR00315: ELONGATNFCT PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF54980: EF-G C-terminal domain-like Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 |
| Tuf1p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain PANTHER PTHR23115:SF31: ELONGATION FACTOR TU (EF-TU) PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description TIGRFAMs TIGR00485: EF-Tu: translation elongation factor Tu TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain PRINTS PR00315: ELONGATNFCT Pfam PF00009: GTP_EFTU Pfam PF03143: GTP_EFTU_D3 Pfam PF03144: GTP_EFTU_D2 |
| Rpl33bp | SUPERFAMILY SSF50447: Translation proteins |
ProDom PD012670: RL33B_YEAST_P41056; Pfam PF01247: Ribosomal_L35Ae PANTHER PTHR10902:SF0: 60S RIBOSOMAL PROTEIN L35A PANTHER PTHR10902: 60S RIBOSOMAL PROTEIN L35A |
| Fre3p | Gene3D G3DSA:2.40.30.10: no description |
SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain SUPERFAMILY SSF63380: Riboflavin synthase domain-like Pfam PF08030: NAD_binding_6 Pfam PF08022: FAD_binding_8 Pfam PF01794: Ferric_reduct Gene3D G3DSA:3.40.50.80: no description PANTHER PTHR32361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32361: FAMILY NOT NAMED |
| Rpl33ap | SUPERFAMILY SSF50447: Translation proteins |
PANTHER PTHR10902:SF0: 60S RIBOSOMAL PROTEIN L35A PANTHER PTHR10902: 60S RIBOSOMAL PROTEIN L35A ProDom PD012670: RL33A_YEAST_P05744; Pfam PF01247: Ribosomal_L35Ae |
| Tah18p | Gene3D G3DSA:2.40.30.10: no description |
PRINTS PR00371: FPNCR PRINTS PR00369: FLAVODOXIN SUPERFAMILY SSF63380: Riboflavin synthase domain-like SUPERFAMILY SSF52218: Flavoproteins SUPERFAMILY SSF52343: Ferredoxin reductase-like, C-terminal NADP-linked domain Gene3D G3DSA:3.40.50.360: no description Gene3D G3DSA:1.20.990.10: no description Gene3D G3DSA:3.40.50.80: no description Pfam PF00667: FAD_binding_1 Pfam PF00258: Flavodoxin_1 Pfam PF00175: NAD_binding_1 PANTHER PTHR19384:SF9: NADPH FAD OXIDOREDUCTASE PANTHER PTHR19384: FLAVODOXIN-RELATED |
| Tef1p | SUPERFAMILY SSF50447: Translation proteins Gene3D G3DSA:2.40.30.10: no description |
PANTHER PTHR23115:SF37: ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50465: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain TIGRFAMs TIGR00483: EF-1_alpha: translation elongation factor EF-1, su Pfam PF00009: GTP_EFTU Pfam PF03143: GTP_EFTU_D3 Pfam PF03144: GTP_EFTU_D2 Gene3D G3DSA:3.40.50.300: no description PRINTS PR00315: ELONGATNFCT |
This table lists domains/motifs that are unique to Rpl3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpl3p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Rpl3p | ||
|---|---|---|
| Database source | Accession number | Description |
| Gene3D | G3DSA:3.30.1430.10 | no description |
| PANTHER | PTHR11363 | 60S RIBOSOMAL PROTEIN L3-RELATED |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Rpl3p .
