RAT1/YOR048C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rat1p domain/motif information see the external links section.

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Shared domains/motifs
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This table lists proteins that share domains/motifs in common with those found in Rat1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rat1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rat1p
Protein Motifs in common with Rat1p Other motifs in this protein (but not in Rat1p )
Xrn1p PANTHER PTHR12341:SF7: SUBFAMILY NOT NAMED
PANTHER PTHR12341: 5'->3' EXORIBONUCLEASE
Pfam PF03159: XRN_N
 PIR superfamily PIRSF006743: 5'-3' exonuclease, Xnr1 type

Unique domains/motifs
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This table lists domains/motifs that are unique to Rat1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rat1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rat1p
Database source Accession number Description
PIR superfamily PIRSF037239 5'-3' exonuclease, Xrn2 type

Transmembrane Domains
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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rat1p .

Signal Peptide(s)
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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rat1p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Rat1p .