PAP2/YOL115W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Pap2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Pap2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pap2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Pap2p
Protein	Motifs in common with Pap2p	Other motifs in this protein (but not in Pap2p )
Pol4p	Gene3D G3DSA:3.30.460.10: no description SUPERFAMILY SSF81301: Nucleotidyltransferase	PANTHER PTHR11276:SF5: GB DEF: DNA POLYMERASE IV (EC 2.7.7.7) (POL IV) PANTHER PTHR11276: DNA POLYMERASE TYPE-X FAMILY MEMBER SMART SM00483: DNA polymerase X family Gene3D G3DSA:1.10.150.110: no description Gene3D G3DSA:3.30.210.10: no description SUPERFAMILY SSF47802: DNA polymerase beta, N-terminal domain-like PRINTS PR00870: DNAPOLXBETA PRINTS PR00869: DNAPOLX
Cca1p	SUPERFAMILY SSF81301: Nucleotidyltransferase Gene3D G3DSA:3.30.460.10: no description	SUPERFAMILY SSF81891: Poly A polymerase C-terminal region-like Gene3D G3DSA:1.10.3090.10: no description Pfam PF01743: PolyA_pol Pfam PF12627: PolyA_pol_RNAbd PANTHER PTHR13734:SF10: TRNA NUCLEOTIDYLTRANSFERASE PANTHER PTHR13734: TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER
Pap1p	Gene3D G3DSA:3.30.460.10: no description SUPERFAMILY SSF81301: Nucleotidyltransferase SUPERFAMILY SSF81631: PAP/OAS1 substrate-binding domain Pfam PF01909: NTP_transf_2	Gene3D G3DSA:1.10.1410.10: no description Gene3D G3DSA:3.30.70.590: no description SUPERFAMILY SSF55003: PAP/Archaeal CCA-adding enzyme, C-terminal domain PIR superfamily PIRSF018425: Poly(A) polymerase Pfam PF04928: PAP_central Pfam PF04926: PAP_RNA-bind PANTHER PTHR10682: POLY(A) POLYMERASE
Atp25p	Gene3D G3DSA:3.30.460.10: no description	Pfam PF13929: mRNA_stabil Pfam PF02410: Oligomerisation
Trf5p	PANTHER PTHR23092:SF13: TOPOISOMERASE 1-RELATED PROTEIN TRF PANTHER PTHR23092: TOPOISOMERASE-RELATED PROTEIN SUPERFAMILY SSF81301: Nucleotidyltransferase SUPERFAMILY SSF81631: PAP/OAS1 substrate-binding domain Pfam PF01909: NTP_transf_2 Pfam PF03828: PAP_assoc Gene3D G3DSA:3.30.460.10: no description	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Pap2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Pap2p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Pap2p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Pap2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Pap2p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Pap2p .