MDM20/YOL076W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Mdm20p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Mdm20p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mdm20p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Mdm20p
Protein	Motifs in common with Mdm20p	Other motifs in this protein (but not in Mdm20p )
Nat1p	PANTHER PTHR22767: N-TERMINAL ACETLYTRANSFERASE-RELATED	Gene3D G3DSA:1.25.40.10: no description Pfam PF12569: NARP1 SMART SM00028: Tetratricopeptide repeats PIR superfamily PIRSF000422: N-terminal acetyltransferase A, auxiliary subunit SUPERFAMILY SSF48452: TPR-like PANTHER PTHR22767:SF2: N-TERMINAL ACETLYTRANSFERASE-RELATED

Unique domains/motifs

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This table lists domains/motifs that are unique to Mdm20p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mdm20p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Mdm20p
Database source	Accession number	Description
PANTHER	PTHR22767:SF1	PEPTIDE ALPHA-N-ACETYLTRANSFERASE-RELATED
Pfam	PF09797	NatB_MDM20

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Mdm20p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Mdm20p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Mdm20p .