RCL1/YOL010W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rcl1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rcl1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGERFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rcl1p domain/motif information see the external links section.

Last updated on 2010-11-23

Other Saccharomyces cerevisiae proteins that contain motifs found in Rcl1p
Protein	Motifs in common with Rcl1p	Other motifs in this protein (but not in Rcl1p )
Aro1p	SUPERFAMILY SSF55205: RNA3'_cycl/enolpyr_transf_A/B	PROSITE PS00885: EPSP_SYNTHASE_2 Pfam PF01202: SKI Gene3D G3DSA:3.40.192.10: G3DSA:3.40.192.10 PROSITE PS00104: EPSP_SYNTHASE_1 Gene3D G3DSA:3.40.50.1970: G3DSA:3.40.50.1970 ProDom PD005337: DHquinase_I SUPERFAMILY SSF53223: SSF53223 PROSITE PS01028: DEHYDROQUINASE_I TIGRFAMs TIGR01357: aroB SUPERFAMILY SSF52540: SSF52540 SUPERFAMILY SSF51569: SSF51569 PIR superfamily PIRSF000514: Pentafunct_AroM Pfam PF01761: DHQ_synthase TIGRFAMs TIGR01093: aroD PRINTS PR01100: SHIKIMTKNASE SUPERFAMILY SSF51735: NAD(P)-bd PANTHER PTHR21090:SF1: DHQ_synth_AroB TIGRFAMs TIGR01356: aroA Gene3D G3DSA:3.65.10.10: EPSP_synthase Gene3D G3DSA:3.40.50.300: G3DSA:3.40.50.300 Gene3D G3DSA:1.20.1090.10: G3DSA:1.20.1090.10 SUPERFAMILY SSF56796: SSF56796 Pfam PF08501: Shikimate_dh_N PANTHER PTHR21090: PTHR21090 Pfam PF00275: EPSP_synthase Gene3D G3DSA:3.20.20.70: Aldolase_TIM Pfam PF01487: DHquinase_I PROSITE PS01128: SHIKIMATE_KINASE TIGRFAMs TIGR01809: Shik-DH-AROM ProDom PD001867: EPSP_synth Pfam PF01488: Shikimate_DH
Tat2p	SUPERFAMILY SSF55205: RNA3'_cycl/enolpyr_transf_A/B	TIGRFAMs TIGR00913: 2A0310 PROSITE PS00218: AMINO_ACID_PERMEASE_1 PANTHER PTHR11785:SF80: PTHR11785:SF80 Pfam PF00324: AA_permease PIR superfamily PIRSF006060: AA_transporter PANTHER PTHR11785: AA/rel_permease1

Unique domains/motifs

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This table lists domains/motifs that are unique to Rcl1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGERFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rcl1p domain/motif information see the external links section.

Last updated on 2010-11-23

Domain/motifs that are unique to Rcl1p
Database source	Accession number	Description
ProDom	PD397608	Q6CUC5_KLULA_Q6CUC5;
PIR superfamily	PIRSF005378	RNA 3'-terminal phosphate cyclase
PANTHER	PTHR11096	RNA 3' TERMINAL PHOSPHATE CYCLASE
Pfam	PF01137	RTC
Pfam	PF05189	RTC_insert
PROSITE	PS01287	RTC

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rcl1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rcl1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rcl1p .

SGD^tm pages Database Copyright © 1997-2010 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.