RPB11/YOL005C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpb11p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpb11p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb11p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpb11p
Protein	Motifs in common with Rpb11p	Other motifs in this protein (but not in Rpb11p )
Rpb3p	Gene3D G3DSA:3.30.1360.10: no description SUPERFAMILY SSF55257: RBP11-like subunits of RNA polymerase	Gene3D G3DSA:2.170.120.12: no description SUPERFAMILY SSF56553: Insert subdomain of RNA polymerase alpha subunit PANTHER PTHR11800:SF2: DNA-DIRECTED RNA POLYMERASE II SUBUNIT 3 PANTHER PTHR11800: DNA-DIRECTED RNA POLYMERASE Pfam PF01000: RNA_pol_A_bac Pfam PF01193: RNA_pol_L SMART SM00662: RNA polymerases D
Rpc19p	PANTHER PTHR13946: DNA-DIRECTED RNA POLYMERASE I,II,III Gene3D G3DSA:3.30.1360.10: no description Pfam PF13656: RNA_pol_L_2 SUPERFAMILY SSF55257: RBP11-like subunits of RNA polymerase	PANTHER PTHR13946:SF17: DNA-DIRECTED RNA POLYMERASES I AND III
Rpc40p	SUPERFAMILY SSF55257: RBP11-like subunits of RNA polymerase Gene3D G3DSA:3.30.1360.10: no description	PANTHER PTHR11800:SF13: DNA-DIRECTED RNA POLYMERASE I PANTHER PTHR11800: DNA-DIRECTED RNA POLYMERASE SUPERFAMILY SSF56553: Insert subdomain of RNA polymerase alpha subunit Gene3D G3DSA:2.170.120.12: no description Pfam PF01000: RNA_pol_A_bac Pfam PF01193: RNA_pol_L SMART SM00662: RNA polymerases D

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpb11p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb11p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpb11p
Database source	Accession number	Description
PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpb11p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpb11p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rpb11p .