SNF12/YNR023W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Snf12p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Snf12p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Snf12p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Snf12p
Protein	Motifs in common with Snf12p	Other motifs in this protein (but not in Snf12p )
Rsc6p	SUPERFAMILY SSF47592: SWIB/MDM2 domain Gene3D G3DSA:1.10.245.10: no description PANTHER PTHR13844:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13844: BRG-1 ASSOCIATED FACTOR 60 (BAF60)	none
Tma64p	Gene3D G3DSA:1.10.245.10: no description SUPERFAMILY SSF47592: SWIB/MDM2 domain	Gene3D G3DSA:2.30.130.10: no description PANTHER PTHR12217:SF3: GB DEF: HYPOTHETICAL PROTEIN PANTHER PTHR12217: LIGATIN Pfam PF01253: SUI1 Pfam PF02201: SWIB SUPERFAMILY SSF55159: eIF1-like SUPERFAMILY SSF88697: PUA domain-like
Tri1p	PANTHER PTHR13844:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13844: BRG-1 ASSOCIATED FACTOR 60 (BAF60) SUPERFAMILY SSF47592: SWIB/MDM2 domain Gene3D G3DSA:1.10.245.10: no description	Pfam PF02201: SWIB Pfam PF08766: DEK_C SMART SM00151: SWI complex, BAF60b domains Gene3D G3DSA:1.10.10.60: no description
Uaf30p	PANTHER PTHR13844:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13844: BRG-1 ASSOCIATED FACTOR 60 (BAF60) SUPERFAMILY SSF47592: SWIB/MDM2 domain Gene3D G3DSA:1.10.245.10: no description	SMART SM00151: SWI complex, BAF60b domains Pfam PF02201: SWIB Pfam PF08766: DEK_C Gene3D G3DSA:1.10.10.60: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Snf12p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Snf12p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Snf12p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Snf12p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Snf12p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Snf12p .