MSB3/YNL293W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Msb3p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Msb3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Msb3p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Msb3p
Protein Motifs in common with Msb3p Other motifs in this protein (but not in Msb3p )
Gyp7p Pfam PF00566: RabGAP-TBC
Gene3D G3DSA:1.10.8.270: no description
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
PANTHER PTHR22957:SF34: TBC1 DOMAIN FAMILY MEMBER 15, 17
Gyp8p Pfam PF00566: RabGAP-TBC
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
PANTHER PTHR20913:SF1: GTPASE-ACTIVATING PROTEIN GYP8
PANTHER PTHR20913: TBC1 DOMAIN FAMILY MEMBER 20/GTPASE
Mdr1p PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Pfam PF00566: RabGAP-TBC
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
Gene3D G3DSA:1.10.8.270: no description
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
PANTHER PTHR22957:SF48: GTPASE-ACTIVATING PROTEIN GYP2
Pfam PF02893: GRAM
Pfam PF13405: EF-hand_6
SUPERFAMILY SSF47473: EF-hand
Gene3D G3DSA:1.10.238.10: no description
SMART SM00568: domain in glucosyltransferases, myotubularin
Oca5p SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
none
Gyp6p SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
Pfam PF00566: RabGAP-TBC
Gene3D G3DSA:1.10.8.270: no description
PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
PANTHER PTHR22957:SF16: GB DEF: GTPASE-ACTIVATING PROTEIN GYP6 (GAP FOR YPT6)
Bub2p PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Pfam PF00566: RabGAP-TBC
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
Gene3D G3DSA:1.10.8.270: no description
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
PANTHER PTHR22957:SF85: SUBFAMILY NOT NAMED
Gyl1p SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
Pfam PF00566: RabGAP-TBC
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
Gene3D G3DSA:1.10.8.270: no description
PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
PANTHER PTHR22957:SF91: TBC DOMAIN CONTAINING PROTEIN
Msb4p Gene3D G3DSA:1.10.8.270: no description
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
Pfam PF00566: RabGAP-TBC
PANTHER PTHR22957:SF54: GH REGULATED TBC PROTEIN-1
PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
none
Gyp1p PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
Gene3D G3DSA:1.10.8.270: no description
SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
Pfam PF00566: RabGAP-TBC
PANTHER PTHR22957:SF26: TBC1 DOMAIN FAMILY MEMBER 22A
Gyp5p SUPERFAMILY SSF47923: Ypt/Rab-GAP domain of gyp1p
PANTHER PTHR22957: TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Pfam PF00566: RabGAP-TBC
SMART SM00164: Domain in Tre-2, BUB2p, and Cdc16p. Probable
Gene3D G3DSA:1.10.8.270: no description
PANTHER PTHR22957:SF99: SUBFAMILY NOT NAMED

Unique domains/motifs


This table lists domains/motifs that are unique to Msb3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Msb3p domain/motif information see the external links section.

Last updated on 2013-12-16

There are no unique domains/motifs predicted for Msb3p .

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Msb3p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Msb3p .


The following external links can be used to directly search external databases for domain/motif information for Msb3p .