NRD1/YNL251C Domains/Motifs and Signal Peptides 
To directly search external databases for Nrd1p domain/motif information see the external links section.
| Click on image for expanded interactive view |
|---|
This table lists proteins that share domains/motifs in common with those found in Nrd1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Nrd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Nrd1p | ||
|---|---|---|
| Protein | Motifs in common with Nrd1p | Other motifs in this protein (but not in Nrd1p ) |
| Pin4p | Gene3D G3DSA:3.30.70.330: no description PANTHER PTHR24011: FAMILY NOT NAMED SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif |
Pfam PF14259: RRM_6 PANTHER PTHR24011:SF54: SUBFAMILY NOT NAMED |
| Mud1p | SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR10501:SF4: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A PANTHER PTHR10501: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B Pfam PF14259: RRM_6 |
| Ngr1p | SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF55: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED |
| Gbp2p | SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR23003:SF1: GB DEF: HRB1 PROTEIN (TOM34 PROTEIN) PANTHER PTHR23003: RNA RECOGNITION MOTIF (RRM) DOMAIN CONTAINING PROTEIN |
| Lsb5p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
PANTHER PTHR13856:SF46: LAS17-BINDING PROTEIN 5 (LSB5) PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY Pfam PF03127: GAT |
| Lhp1p | Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
Pfam PF05383: La PANTHER PTHR22792:SF2: LUPUS LA PROTEIN (LA RIBONUCLEOPROTEIN) PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Gene3D G3DSA:1.10.10.10: no description PRINTS PR00302: LUPUSLA SMART SM00715: Domain in the RNA-binding Lupus La protein; |
| Asm4p | SUPERFAMILY SSF54928: RNA-binding domain, RBD |
Pfam PF05172: Nup35_RRM |
| Ent1p | Gene3D G3DSA:1.25.40.90: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
PANTHER PTHR12276:SF11: ENT1,2 PANTHER PTHR12276: EPSIN/ENT-RELATED SMART SM00273: Epsin N-terminal homology (ENTH) domain SMART SM00726: Ubiquitin-interacting motif. Pfam PF01417: ENTH |
| Nrp1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
SUPERFAMILY SSF90209: Ran BP2/NZF zinc finger-like Pfam PF00641: zf-RanBP Gene3D G3DSA:4.10.1060.10: no description PANTHER PTHR23111:SF4: GB DEF: ASPARAGINE-RICH PROTEIN (ARP PROTEIN) PANTHER PTHR23111: ZINC FINGER PROTEIN SMART SM00547: Zinc finger domain |
| Cwc2p | Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR14089:SF2: CELL CYCLE CONTROL PROTEIN CWF2 PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN |
| Nop6p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
none |
| Whi4p | Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR24622:SF47: SUBFAMILY NOT NAMED PANTHER PTHR24622: FAMILY NOT NAMED |
| Ent5p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
Pfam PF01417: ENTH SMART SM00273: Epsin N-terminal homology (ENTH) domain PANTHER PTHR12276:SF5: EPSIN 5 PANTHER PTHR12276: EPSIN/ENT-RELATED |
| Pcf11p | Gene3D G3DSA:1.25.40.90: no description SMART SM00582: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
PANTHER PTHR15921: PRE-MRNA CLEAVAGE COMPLEX II Pfam PF11526: CFIA_Pcf11 |
| Rtt103p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description SMART SM00582: no description |
PANTHER PTHR12460:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12460: CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN Pfam PF04818: CTD_bind |
| Gga1p | Gene3D G3DSA:1.25.40.90: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
Pfam PF00790: VHS Pfam PF02883: Alpha_adaptinC2 Pfam PF03127: GAT Gene3D G3DSA:1.20.5.170: no description Gene3D G3DSA:1.20.58.160: no description Gene3D G3DSA:2.60.40.1230: no description SUPERFAMILY SSF89009: GAT-like domain SUPERFAMILY SSF49348: Clathrin adaptor appendage domain SMART SM00288: Domain present in VPS-27, Hrs and STA SMART SM00809: Adaptin C-terminal domain PANTHER PTHR13856:SF43: GOLGI ASSOCIATED, GAMMA ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN (GGA), PLANT PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY |
| Yra1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif |
PANTHER PTHR19965: RNA AND EXPORT FACTOR BINDING PROTEIN |
| Tif35p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif |
PANTHER PTHR10352: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G Pfam PF12353: eIF3g PIR superfamily PIRSF037949: Translation initiation factor 3, RNA-binding subunit |
| Npl3p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF122: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED |
| Mot2p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
Pfam PF13893: RRM_5 Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box PANTHER PTHR12603:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12603: CCR4-NOT TRANSCRIPTION COMPLEX RELATED SMART SM00361: RNA recognition motif |
| Rps24ap | Gene3D G3DSA:3.30.70.330: no description |
ProDom PD006052: RS24_YEAST_P26782; SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e Pfam PF01282: Ribosomal_S24e PANTHER PTHR10496: 40S RIBOSOMAL PROTEIN S24 |
| Pab1p | PANTHER PTHR24011: FAMILY NOT NAMED Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR24011:SF45: SUBFAMILY NOT NAMED Gene3D G3DSA:1.10.1900.10: no description SMART SM00517: C-terminal domain of Poly(A)-binding protein Pfam PF00658: PABP SUPERFAMILY SSF63570: PABC (PABP) domain TIGRFAMs TIGR01628: PABP-1234: polyadenylate binding protein, human ty |
| Pes4p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif |
PANTHER PTHR24012:SF44: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF13893: RRM_5 SMART SM00361: RNA recognition motif |
| Rrt5p | SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR24622:SF46: SUBFAMILY NOT NAMED PANTHER PTHR24622: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Rna15p | Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
Pfam PF14304: CSTF_C PANTHER PTHR23139: RNA-BINDING PROTEIN |
| Upf3p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR13112: UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Pfam PF03467: Smg4_UPF3 |
| Pti1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description |
Pfam PF14327: CSTF2_hinge |
| Nsr1p | Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif |
PANTHER PTHR24012:SF8: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED |
| Pet54p | SUPERFAMILY SSF54928: RNA-binding domain, RBD |
SMART SM00361: RNA recognition motif |
| Yap1802p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
SUPERFAMILY SSF89009: GAT-like domain SMART SM00273: Epsin N-terminal homology (ENTH) domain PANTHER PTHR22951:SF2: CLATHRIN ASSEMBLY PROTEIN PANTHER PTHR22951: CLATHRIN ASSEMBLY PROTEIN Gene3D G3DSA:1.20.58.150: no description Pfam PF07651: ANTH |
| Ygr250cp | Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 |
PANTHER PTHR23139:SF7: GB DEF: HYPOTHETICAL 89.5 KDA PROTEIN IN MGA1-GCN4 INTERGENIC REGION PANTHER PTHR23139: RNA-BINDING PROTEIN Pfam PF14259: RRM_6 |
| Hse1p | Gene3D G3DSA:1.25.40.90: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
Pfam PF00790: VHS Pfam PF00018: SH3_1 PANTHER PTHR13856:SF44: SIGNAL TRANSDUCING ADAPTER MOLECULE (STAM) PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY Gene3D G3DSA:2.30.30.40: no description SUPERFAMILY SSF50044: SH3-domain SMART SM00288: Domain present in VPS-27, Hrs and STAM SMART SM00726: Ubiquitin-interacting motif. SMART SM00326: Src homology PRINTS PR00452: SH3DOMAIN PRINTS PR00499: P67PHOX |
| Rim4p | Pfam PF00076: RRM_1 PANTHER PTHR24011: FAMILY NOT NAMED SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR24011:SF102: SUBFAMILY NOT NAMED SMART SM00361: RNA recognition motif |
| Sbp1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR24012:SF121: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Mip6p | Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
Pfam PF13893: RRM_5 PANTHER PTHR24012:SF44: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED |
| Nam8p | SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF56: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Gga2p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
SUPERFAMILY SSF49348: Clathrin adaptor appendage domain SUPERFAMILY SSF89009: GAT-like domain Gene3D G3DSA:1.20.5.170: no description Gene3D G3DSA:1.20.58.160: no description Gene3D G3DSA:2.60.40.1230: no description Pfam PF00790: VHS Pfam PF02883: Alpha_adaptinC2 Pfam PF03127: GAT PANTHER PTHR13856:SF43: GOLGI ASSOCIATED, GAMMA ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN (GGA), PLANT PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY SMART SM00288: Domain present in VPS-27, Hrs and STA SMART SM00809: Adaptin C-terminal domain |
| Yhr127wp | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
none |
| Yap1801p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
Pfam PF07651: ANTH PANTHER PTHR22951:SF2: CLATHRIN ASSEMBLY PROTEIN PANTHER PTHR22951: CLATHRIN ASSEMBLY PROTEIN SUPERFAMILY SSF89009: GAT-like domain SMART SM00273: Epsin N-terminal homology (ENTH) domain Gene3D G3DSA:1.20.58.150: no description |
| Snp1p | Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif |
Pfam PF12220: U1snRNP70_N PANTHER PTHR13952: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
| Rps24bp | Gene3D G3DSA:3.30.70.330: no description |
Pfam PF01282: Ribosomal_S24e PANTHER PTHR10496: 40S RIBOSOMAL PROTEIN S24 SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e ProDom PD006052: RS24_YEAST_P26782; |
| Sgn1p | Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 |
PANTHER PTHR23365: POLY-A BINDING PROTEIN 2 |
| Ist3p | Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif |
PANTHER PTHR23139: RNA-BINDING PROTEIN |
| Msl1p | Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD |
Pfam PF13893: RRM_5 PANTHER PTHR10501:SF6: SUBFAMILY NOT NAMED PANTHER PTHR10501: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
| Jsn1p | Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 |
PANTHER PTHR12537:SF18: JSN1 PROTEIN (PUF1 PROTEIN) PANTHER PTHR12537: RNA BINDING PROTEIN PUMILIO-RELATED Gene3D G3DSA:1.25.10.10: no description SMART SM00025: Pumilio-like repeats SUPERFAMILY SSF48371: ARM repeat Pfam PF00806: PUF |
| Ent3p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
SMART SM00273: Epsin N-terminal homology (ENTH) domain PANTHER PTHR12276:SF12: EPSIN 4/ENTHOPROTIN PANTHER PTHR12276: EPSIN/ENT-RELATED Pfam PF01417: ENTH |
| Mud2p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
SMART SM00361: RNA recognition motif PANTHER PTHR23139:SF9: SPLICING FACTOR U2AF LARGE SUBUNIT PANTHER PTHR23139: RNA-BINDING PROTEIN |
| Yra2p | SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR24622:SF46: SUBFAMILY NOT NAMED PANTHER PTHR24622: FAMILY NOT NAMED |
| Ent4p | Gene3D G3DSA:1.25.40.90: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
Pfam PF01417: ENTH PANTHER PTHR12276: EPSIN/ENT-RELATED SMART SM00273: Epsin N-terminal homology (ENTH) domain |
| Rnp1p | Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR24622:SF85: SUBFAMILY NOT NAMED PANTHER PTHR24622: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Ent2p | Gene3D G3DSA:1.25.40.90: no description SUPERFAMILY SSF48464: ENTH/VHS domain |
Pfam PF01417: ENTH PANTHER PTHR12276:SF11: ENT1,2 PANTHER PTHR12276: EPSIN/ENT-RELATED SMART SM00273: Epsin N-terminal homology (ENTH) domain SMART SM00726: Ubiquitin-interacting motif. |
| Nab6p | SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR14089:SF7: PROTEIN C33G3.6, CONFIRMED BY TRANSCRIPT EVIDENCE PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN Pfam PF10567: Nab6_mRNP_bdg Pfam PF10378: RRM Pfam PF14259: RRM_6 |
| Nup53p | SUPERFAMILY SSF54928: RNA-binding domain, RBD |
Pfam PF05172: Nup35_RRM |
| Prp24p | Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD PANTHER PTHR24011: FAMILY NOT NAMED |
Pfam PF05391: Lsm_interact PANTHER PTHR24011:SF5: SUBFAMILY NOT NAMED |
| Yme2p | SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR32198:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32198: FAMILY NOT NAMED Pfam PF10443: RNA12 |
| Hrb1p | Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif |
PANTHER PTHR23003:SF1: GB DEF: HRB1 PROTEIN (TOM34 PROTEIN) PANTHER PTHR23003: RNA RECOGNITION MOTIF (RRM) DOMAIN CONTAINING PROTEIN |
| Pub1p | Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description |
PANTHER PTHR24622:SF45: RNA-BINDING PROTEIN 28 (RNA-BINDING MOTIF PROTEIN 28) SOURCE:UNIPROTKB/SWISS-PR PANTHER PTHR24622: FAMILY NOT NAMED SMART SM00361: RNA recognition motif |
| Nop15p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 |
PANTHER PTHR23365: POLY-A BINDING PROTEIN 2 |
| Nop13p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF4: DNA-BINDING PROTEIN MODULO PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Whi3p | Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR24622:SF47: SUBFAMILY NOT NAMED PANTHER PTHR24622: FAMILY NOT NAMED |
| Sla2p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
SUPERFAMILY SSF109885: I/LWEQ domain Pfam PF07651: ANTH Pfam PF01608: I_LWEQ SMART SM00273: Epsin N-terminal homology (ENTH) domain SMART SM00307: I/LWEQ domain PANTHER PTHR10407:SF2: SLA2 PROTEIN (TRANSMEMBRANE PROTEIN MOP2) PANTHER PTHR10407: HUNTINGTIN INTERACTING PROTEIN 1 Gene3D G3DSA:1.20.1410.10: no description ProDom PD011820: SLA2_YEAST_P33338; |
| Cus2p | SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR15608: SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2 Pfam PF14259: RRM_6 |
| Vps27p | SUPERFAMILY SSF48464: ENTH/VHS domain Gene3D G3DSA:1.25.40.90: no description |
SUPERFAMILY SSF57903: FYVE/PHD zinc finger SMART SM00288: Domain present in VPS-27, Hrs and STAM SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA SMART SM00726: Ubiquitin-interacting motif. Gene3D G3DSA:3.30.40.10: no description PIR superfamily PIRSF036956: Ubiquitin binding protein, Hrs/Vps27 type PANTHER PTHR13856:SF8: VACUOLAR PROTEIN SORTING-ASSOCIATED (VPS27) PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY Pfam PF00790: VHS Pfam PF01363: FYVE |
| Esf2p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD |
PANTHER PTHR12311:SF10: SUBFAMILY NOT NAMED PANTHER PTHR12311: FAMILY NOT NAMED |
| Nop12p | PANTHER PTHR24011: FAMILY NOT NAMED Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif |
PANTHER PTHR24011:SF6: SUBFAMILY NOT NAMED |
| Hrp1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif |
PANTHER PTHR24012:SF10: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED |
| Rpl25p | Gene3D G3DSA:3.30.70.330: no description |
SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e PANTHER PTHR11620: 60S RIBOSOMAL PROTEIN L23A Pfam PF00276: Ribosomal_L23 Pfam PF03939: Ribosomal_L23eN |
| Nop8p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD PANTHER PTHR24011: FAMILY NOT NAMED |
Pfam PF13893: RRM_5 PANTHER PTHR24011:SF101: SUBFAMILY NOT NAMED |
| Hsh49p | Pfam PF00076: RRM_1 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif PANTHER PTHR24011: FAMILY NOT NAMED |
PANTHER PTHR24011:SF0: SUBFAMILY NOT NAMED |
| Prt1p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif |
PIR superfamily PIRSF036424: Translation initiation factor eIF-3b Gene3D G3DSA:2.120.10.30: no description SUPERFAMILY SSF82171: DPP6 N-terminal domain-like PANTHER PTHR14068:SF0: SUBFAMILY NOT NAMED PANTHER PTHR14068: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (EIF3)-RELATED Pfam PF08662: eIF2A |
| Nop4p | SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF118: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Cbc2p | SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 |
PANTHER PTHR18847: 20 KD NUCLEAR CAP BINDING PROTEIN |
| Mrn1p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif |
PANTHER PTHR14089:SF7: PROTEIN C33G3.6, CONFIRMED BY TRANSCRIPT EVIDENCE PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN Pfam PF14259: RRM_6 Pfam PF13893: RRM_5 |
| Nab3p | SUPERFAMILY SSF54928: RNA-binding domain, RBD SMART SM00360: RNA recognition motif Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 |
SUPERFAMILY SSF52954: Class II aaRS ABD-related Gene3D G3DSA:3.40.50.800: no description PANTHER PTHR13968:SF15: AFL070CP PANTHER PTHR13968: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| Puf2p | Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD Pfam PF00076: RRM_1 SMART SM00360: RNA recognition motif |
PANTHER PTHR12537:SF18: JSN1 PROTEIN (PUF1 PROTEIN) PANTHER PTHR12537: RNA BINDING PROTEIN PUMILIO-RELATED Gene3D G3DSA:1.25.10.10: no description SUPERFAMILY SSF48371: ARM repeat Pfam PF00806: PUF SMART SM00025: Pumilio-like repeats |
| Mrd1p | SMART SM00360: RNA recognition motif SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description Pfam PF00076: RRM_1 |
PANTHER PTHR24012:SF78: SUBFAMILY NOT NAMED PANTHER PTHR24012: FAMILY NOT NAMED Pfam PF14259: RRM_6 |
| Tif3p | SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description SMART SM00360: RNA recognition motif |
Pfam PF14259: RRM_6 PANTHER PTHR23236:SF6: SUBFAMILY NOT NAMED PANTHER PTHR23236: EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
This table lists domains/motifs that are unique to Nrd1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Nrd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Nrd1p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR24011:SF73 | SUBFAMILY NOT NAMED |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Nrd1p .
