LSM7/YNL147W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Lsm7p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Lsm7p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Lsm7p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Lsm7p
Protein	Motifs in common with Lsm7p	Other motifs in this protein (but not in Lsm7p )
Lsm2p	Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Gene3D G3DSA:2.30.30.100: no description	PIR superfamily PIRSF016394: U6 snRNA-associated Sm-like protein LSm2 PANTHER PTHR13829: SNRNP CORE PROTEIN FAMILY MEMBER
Mak31p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description	none
Lsm6p	Gene3D G3DSA:2.30.30.100: no description SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins	PANTHER PTHR11021: SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F)
Smb1p	Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description SUPERFAMILY SSF50182: Sm-like ribonucleoproteins	PANTHER PTHR10701: SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
Lsm4p	Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description SUPERFAMILY SSF50182: Sm-like ribonucleoproteins	PANTHER PTHR23338: SMALL NUCLEAR RIBONUCLEOPROTEIN SM
Lsm5p	Pfam PF01423: LSM SUPERFAMILY SSF50182: Sm-like ribonucleoproteins SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description	PANTHER PTHR20971: U6 SNRNA-ASSOCIATED PROTEIN
Smx2p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins PANTHER PTHR10553: SMALL NUCLEAR RIBONUCLEOPROTEIN Gene3D G3DSA:2.30.30.100: no description SMART SM00651: snRNP Sm proteins Pfam PF01423: LSM	PANTHER PTHR10553:SF2: SMALL NUCLEAR RIBONUCLEOPROTEIN G (SNRNP-G)
Smd1p	Pfam PF01423: LSM Gene3D G3DSA:2.30.30.100: no description SMART SM00651: snRNP Sm proteins SUPERFAMILY SSF50182: Sm-like ribonucleoproteins	PANTHER PTHR23338:SF18: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 PANTHER PTHR23338: SMALL NUCLEAR RIBONUCLEOPROTEIN SM
Lsm1p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description Pfam PF01423: LSM	PANTHER PTHR15588:SF5: SUBFAMILY NOT NAMED PANTHER PTHR15588: LSM1
Lsm8p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins SMART SM00651: snRNP Sm proteins Gene3D G3DSA:2.30.30.100: no description Pfam PF01423: LSM	PANTHER PTHR15588: LSM1
Smd3p	SMART SM00651: snRNP Sm proteins SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Pfam PF01423: LSM Gene3D G3DSA:2.30.30.100: no description	PANTHER PTHR23338:SF19: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 PANTHER PTHR23338: SMALL NUCLEAR RIBONUCLEOPROTEIN SM
Smd2p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Gene3D G3DSA:2.30.30.100: no description SMART SM00651: snRNP Sm proteins Pfam PF01423: LSM	PANTHER PTHR12777: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
Lsm3p	SMART SM00651: snRNP Sm proteins SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Gene3D G3DSA:2.30.30.100: no description Pfam PF01423: LSM	PANTHER PTHR13110:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13110: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3
Sme1p	Gene3D G3DSA:2.30.30.100: no description Pfam PF01423: LSM SUPERFAMILY SSF50182: Sm-like ribonucleoproteins SMART SM00651: snRNP Sm proteins	PANTHER PTHR11193:SF0: SMALL NUCLEAR RIBONUCLEOPROTEIN E PANTHER PTHR11193: SMALL NUCLEAR RIBONUCLEOPROTEIN E
Scd6p	SUPERFAMILY SSF50182: Sm-like ribonucleoproteins	Pfam PF12701: LSM14 Pfam PF09532: FDF PANTHER PTHR13586: SCD6 PROTEIN-RELATED
Smx3p	Gene3D G3DSA:2.30.30.100: no description SUPERFAMILY SSF50182: Sm-like ribonucleoproteins Pfam PF01423: LSM SMART SM00651: snRNP Sm proteins	PIR superfamily PIRSF006609: Small nuclear ribonucleoprotein SmF PANTHER PTHR11021: SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F)

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Lsm7p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Lsm7p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Lsm7p
Database source	Accession number	Description
PIR superfamily	PIRSF037188	U6 snRNA-associated Sm-like protein LSm7
PANTHER	PTHR10553:SF1	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Lsm7p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Lsm7p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Lsm7p .