TOP2/YNL088W Domains/Motifs and Signal Peptides 
To directly search external databases for Top2p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Top2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Top2p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Top2p | ||
|---|---|---|
| Protein | Motifs in common with Top2p | Other motifs in this protein (but not in Top2p ) |
| Pim1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
SMART SM00464: Found in ATP-dependent protease La (LON) SMART SM00382: ATPases associated with a variety of cellula TIGRFAMs TIGR00763: lon: ATP-dependent protease La SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF88697: PUA domain-like PRINTS PR00830: ENDOLAPTASE Pfam PF05362: Lon_C Pfam PF02190: LON Pfam PF00004: AAA Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description PANTHER PTHR10046:SF23: LON PROTEASE HOMOLOG, MITOCHONDRIAL PANTHER PTHR10046: ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| Gal1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PIR superfamily PIRSF000530: Galactokinase PRINTS PR00959: MEVGALKINASE PRINTS PR00473: GALCTOKINASE Pfam PF10509: GalKase_gal_bdg Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C Gene3D G3DSA:3.30.70.890: no description PANTHER PTHR10457:SF7: GALACTOKINASE 2 PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE TIGRFAMs TIGR00131: gal_kin: galactokinase |
| Mrps9p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
Pfam PF00380: Ribosomal_S9 PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 |
| Dur1,2p | Gene3D G3DSA:3.30.1360.40: no description |
PANTHER PTHR18866:SF41: SUBFAMILY NOT NAMED PANTHER PTHR18866: CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE SUPERFAMILY SSF75304: Amidase signature (AS) enzymes SUPERFAMILY SSF56059: Glutathione synthetase ATP-binding domain-like SUPERFAMILY SSF52440: PreATP-grasp domain SUPERFAMILY SSF51246: Rudiment single hybrid motif SUPERFAMILY SSF51230: Single hybrid motif Pfam PF01425: Amidase Pfam PF02626: AHS2 Pfam PF02786: CPSase_L_D2 Pfam PF02682: AHS1 Pfam PF00289: CPSase_L_chain Pfam PF02785: Biotin_carb_C Pfam PF00364: Biotin_lipoyl SMART SM00878: Biotin carboxylase C-terminal domain SMART SM00797: Allophanate hydrolase subunit SMART SM00796: Allophanate hydrolase subunit TIGRFAMs TIGR02712: urea_carbox: urea carboxylase TIGRFAMs TIGR02713: allophanate_hyd: allophanate hydrolase TIGRFAMs TIGR00724: urea_amlyse_rel: biotin-dependent carboxylase unch Gene3D G3DSA:3.90.1300.10: no description Gene3D G3DSA:3.10.490.10: no description Gene3D G3DSA:3.40.50.20: no description Gene3D G3DSA:3.30.1490.20: no description Gene3D G3DSA:3.30.470.20: no description Gene3D G3DSA:2.40.100.10: no description Gene3D G3DSA:2.40.50.100: no description |
| Mrps5p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.160.20: no description PANTHER PTHR13718:SF2: 30S RIBOSOMAL PROTEIN S5 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C SUPERFAMILY SSF54768: dsRNA-binding domain-like |
| Rrp43p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR11097:SF1: GB DEF: EXOSOME COMPLEX EXONUCLEASE RRP43 (EC 3.1.13.-) (RIBOSOMAL RNA PROCESSING PROTEI PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) Pfam PF01138: RNase_PH |
| Yih1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR16301: IMPACT-RELATED SMART SM00591: no description SUPERFAMILY SSF54495: UBC-like Gene3D G3DSA:3.10.110.10: no description Gene3D G3DSA:3.30.230.30: no description Pfam PF01205: UPF0029 Pfam PF05773: RWD |
| Rps16bp | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
Pfam PF00380: Ribosomal_S9 PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 |
| Rrp42p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR11097:SF2: EXOSOME COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA PROCESSING PROTEIN 42), INVERTEBRATE PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) Pfam PF01138: RNase_PH |
| Ydl177cp | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR16301: IMPACT-RELATED Gene3D G3DSA:3.30.230.30: no description Pfam PF01205: UPF0029 |
| Gal3p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PANTHER PTHR10457:SF7: GALACTOKINASE 2 PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE TIGRFAMs TIGR00131: gal_kin: galactokinase Pfam PF10509: GalKase_gal_bdg Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C Gene3D G3DSA:3.30.70.890: no description PIR superfamily PIRSF000530: Galactokinase PRINTS PR00959: MEVGALKINASE PRINTS PR00473: GALCTOKINASE |
| Rrp45p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR11097:SF8: EXOSOME COMPLEX EXONUCLEASE RRP45 (POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 1) (RIBOSOMAL RNA PROCESSING PROTEIN 45) PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) Pfam PF01138: RNase_PH Pfam PF03725: RNase_PH_C |
| Eft2p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT |
| Pkp2p | Gene3D G3DSA:3.30.565.10: no description SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
PANTHER PTHR11947:SF1: PYRUVATE DEHYDROGENASE KINASE PANTHER PTHR11947: PYRUVATE DEHYDROGENASE KINASE Pfam PF10436: BCDHK_Adom3 Gene3D G3DSA:1.20.140.20: no description SUPERFAMILY SSF69012: alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| Rps2p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
TIGRFAMs TIGR01020: rpsE_arch: ribosomal protein S5 SUPERFAMILY SSF54768: dsRNA-binding domain-like Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C Gene3D G3DSA:3.30.160.20: no description PANTHER PTHR13718:SF4: 40S RIBOSOMAL PROTEIN S2 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT |
| Rrp46p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF55666: Ribonuclease PH domain 2-like Gene3D G3DSA:3.30.230.70: no description PANTHER PTHR11953: RIBONUCLEASE PH RELATED Pfam PF01138: RNase_PH Pfam PF03725: RNase_PH_C |
| Ski6p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF55666: Ribonuclease PH domain 2-like Pfam PF01138: RNase_PH Pfam PF03725: RNase_PH_C Gene3D G3DSA:3.30.230.70: no description PANTHER PTHR11953: RIBONUCLEASE PH RELATED |
| Thr1p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PIR superfamily PIRSF000676: Homoserine kinase Pfam PF00288: GHMP_kinases_N Gene3D G3DSA:3.30.70.890: no description TIGRFAMs TIGR00191: thrB: homoserine kinase PANTHER PTHR20861:SF1: HOMOSERINE KINASE PANTHER PTHR20861: HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PRINTS PR00958: HOMSERKINASE |
| Pkp1p | Gene3D G3DSA:3.30.565.10: no description SMART SM00387: Histidine kinase-like ATPases Pfam PF02518: HATPase_c SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
PANTHER PTHR11947:SF2: PYRUVATE DEHYDROGENASE KINASE PANTHER PTHR11947: PYRUVATE DEHYDROGENASE KINASE PRINTS PR00344: BCTRLSENSOR Gene3D G3DSA:1.20.140.20: no description Pfam PF10436: BCDHK_Adom3 SUPERFAMILY SSF69012: alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| Sln1p | SMART SM00387: Histidine kinase-like ATPases Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
PRINTS PR00344: BCTRLSENSOR SMART SM00388: His Kinase A (phosphoacceptor) domain SMART SM00448: cheY-homologous receiver domain Pfam PF00072: Response_reg Pfam PF00512: HisKA PANTHER PTHR24423:SF360: HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE PANTHER PTHR24423: TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED Gene3D G3DSA:1.10.287.130: no description Gene3D G3DSA:3.40.50.2300: no description SUPERFAMILY SSF52172: CheY-like SUPERFAMILY SSF47384: Homodimeric domain of signal transducing histidine kinase |
| Snu114p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description PANTHER PTHR23115:SF2: TRANSLATION ELONGATION FACTOR 2-RELATED PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like SUPERFAMILY SSF50447: Translation proteins SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus Pfam PF00009: GTP_EFTU Pfam PF03144: GTP_EFTU_D2 Pfam PF03764: EFG_IV Pfam PF00679: EFG_C |
| Mlh2p | Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF01119: DNA_mis_repair PANTHER PTHR10073:SF9: DNA MISMATCH REPAIR PROTEIN PMS1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL |
| Mef1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like PANTHER PTHR23115:SF66: SUBFAMILY NOT NAMED PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT TIGRFAMs TIGR00484: EF-G: translation elongation factor G TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Top3p | Pfam PF01751: Toprim |
Gene3D G3DSA:3.40.50.140: no description Gene3D G3DSA:1.10.460.10: no description Gene3D G3DSA:1.10.290.10: no description SUPERFAMILY SSF56712: Prokaryotic type I DNA topoisomerase SMART SM00493: no description SMART SM00436: Bacterial DNA topoisomeraes I ATP-binding do SMART SM00437: Bacterial DNA topoisomerase I DNA-binding do PRINTS PR00417: PRTPISMRASEI PANTHER PTHR11390:SF17: SUBFAMILY NOT NAMED PANTHER PTHR11390: PROKARYOTIC DNA TOPOISOMERASE Pfam PF01131: Topoisom_bac |
| Rps16ap | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 Pfam PF00380: Ribosomal_S9 |
| Mlh1p | SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description |
Pfam PF01119: DNA_mis_repair Pfam PF13589: HATPase_c_3 TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL PANTHER PTHR10073:SF11: DNA MISMATCH REPAIR PROTEIN MLH1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) |
| Hsc82p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description SMART SM00387: Histidine kinase-like ATPases |
PRINTS PR00775: HEATSHOCK90 SUPERFAMILY SSF110942: HSP90 C-terminal domain PANTHER PTHR11528: HEAT SHOCK PROTEIN 90 Pfam PF00183: HSP90 PIR superfamily PIRSF002583: Heat shock protein, HSP90/HTPG types |
| Erg12p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.70.890: no description Pfam PF00288: GHMP_kinases_N PANTHER PTHR10457:SF4: MEVALONATE KINASE PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PRINTS PR00959: MEVGALKINASE TIGRFAMs TIGR00549: mevalon_kin: mevalonate kinase |
| Erg8p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.70.890: no description PIR superfamily PIRSF017288: Phosphomevalonate kinase, eukaryotic GHMP type TIGRFAMs TIGR01219: Pmev_kin_ERG8: phosphomevalonate kinase PANTHER PTHR31814: FAMILY NOT NAMED Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C |
| Pms1p | SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description |
SUPERFAMILY SSF118116: DNA mismatch repair protein MutL PANTHER PTHR10073:SF9: DNA MISMATCH REPAIR PROTEIN PMS1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL SMART SM00853: MutL C terminal dimerisation domain Pfam PF01119: DNA_mis_repair Pfam PF08676: MutL_C Pfam PF13589: HATPase_c_3 |
| Ria1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like SUPERFAMILY SSF50447: Translation proteins PANTHER PTHR23115:SF3: TRANSLATION ELONGATION FACTOR PANTHER PTHR23115: TRANSLATION FACTOR PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Mvd1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Gene3D G3DSA:3.30.230.10: no description |
TIGRFAMs TIGR01240: mevDPdecarb: diphosphomevalonate decarboxylase SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PANTHER PTHR10977:SF2: DIPHOSPHOMEVALONATE DECARBOXYLASE PANTHER PTHR10977: DIPHOSPHOMEVALONATE DECARBOXYLASE PIR superfamily PIRSF015950: Diphosphomevalonate decarboxylase Pfam PF00288: GHMP_kinases_N Gene3D G3DSA:3.30.70.890: no description |
| Eft1p | Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.70.240: no description PRINTS PR00315: ELONGATNFCT PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 |
| His3p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF00475: IGPD PANTHER PTHR23133:SF2: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 PANTHER PTHR23133: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 Gene3D G3DSA:3.30.230.40: no description |
| Mlh3p | Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR10073:SF7: DNA MISMATCH REPAIR PROTEIN MLH3 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) SUPERFAMILY SSF118116: DNA mismatch repair protein MutL SMART SM00853: MutL C terminal dimerisation domain Pfam PF13589: HATPase_c_3 Pfam PF08676: MutL_C |
| Hsp82p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SMART SM00387: Histidine kinase-like ATPases Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description |
PRINTS PR00775: HEATSHOCK90 PIR superfamily PIRSF002583: Heat shock protein, HSP90/HTPG types SUPERFAMILY SSF110942: HSP90 C-terminal domain PANTHER PTHR11528: HEAT SHOCK PROTEIN 90 Pfam PF00183: HSP90 |
This table lists domains/motifs that are unique to Top2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Top2p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Top2p | ||
|---|---|---|
| Database source | Accession number | Description |
| PRINTS | PR00418 | TPI2FAMILY |
| PRINTS | PR01158 | TOPISMRASEII |
| Gene3D | G3DSA:1.10.268.10 | no description |
| Gene3D | G3DSA:3.30.1490.30 | no description |
| Gene3D | G3DSA:3.40.50.670 | no description |
| Gene3D | G3DSA:3.90.199.10 | no description |
| PANTHER | PTHR10169 | DNA TOPOISOMERASE/GYRASE |
| PANTHER | PTHR10169:SF19 | DNA TOPOISOMERASE 2 |
| Pfam | PF00204 | DNA_gyraseB |
| Pfam | PF00521 | DNA_topoisoIV |
| SMART | SM00433 | TopoisomeraseII |
| SMART | SM00434 | DNA Topoisomerase IV |
| SUPERFAMILY | SSF56719 | Type II DNA topoisomerase |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Top2p .
