MKT1/YNL085W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Mkt1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Mkt1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mkt1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Mkt1p
Protein	Motifs in common with Mkt1p	Other motifs in this protein (but not in Mkt1p )
Din7p	Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region	PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:1.10.150.20: no description PANTHER PTHR11081:SF8: EXONUCLEASE 1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo
Fcf1p	SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description	SMART SM00670: Large family of predicted nucleotide-binding Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED
Yen1p	Gene3D G3DSA:3.40.50.1010: no description SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SUPERFAMILY SSF88723: PIN domain-like Pfam PF00867: XPG_I	PANTHER PTHR11081:SF12: NUCLEASE PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain PRINTS PR00853: XPGRADSUPER
Rad2p	Pfam PF00752: XPG_N Pfam PF00867: XPG_I Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region	Gene3D G3DSA:1.10.150.20: no description PRINTS PR00853: XPGRADSUPER PRINTS PR00066: XRODRMPGMNTG PANTHER PTHR11081:SF13: DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS XERODERMA PIGMENTOSUM GROUP G-COMPL PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo TIGRFAMs TIGR00600: rad2: DNA excision repair protein (rad2)
Rad27p	Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo PRINTS PR00853: XPGRADSUPER PANTHER PTHR11081:SF9: FLAP ENDONUCLEASE-1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain
Nmd4p	Gene3D G3DSA:3.40.50.1010: no description	ProDom PD112888: NMD4_YEAST_Q12129; SMART SM00670: Large family of predicted nucleotide-binding
Dis3p	Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00670: Large family of predicted nucleotide-binding SMART SM00955: no description SMART SM00316: Ribosomal protein S1-like RNA-binding domain PANTHER PTHR23355:SF13: MITOTIC CONTROL PROTEIN DIS3 PANTHER PTHR23355: RIBONUCLEASE Pfam PF00773: RNB Pfam PF13638: PIN_4
Utp23p	SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description	Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED
Exo1p	SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region Pfam PF00752: XPG_N Pfam PF00867: XPG_I Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo PANTHER PTHR11081:SF8: EXONUCLEASE 1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain
Swt1p	Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00670: Large family of predicted nucleotide-binding Pfam PF13638: PIN_4 PANTHER PTHR16161:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16161: UNCHARACTERIZED

Unique domains/motifs

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This table lists domains/motifs that are unique to Mkt1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mkt1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Mkt1p
Database source	Accession number	Description
PANTHER	PTHR32221	FAMILY NOT NAMED
PANTHER	PTHR32221:SF0	SUBFAMILY NOT NAMED
Pfam	PF12246	MKT1_C
Pfam	PF12247	MKT1_N

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Mkt1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Mkt1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Mkt1p .