SSN8/YNL025C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ssn8p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Ssn8p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ssn8p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Ssn8p
Protein	Motifs in common with Ssn8p	Other motifs in this protein (but not in Ssn8p )
Cln3p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like Pfam PF00134: Cyclin_N	PANTHER PTHR10177:SF40: SUBFAMILY NOT NAMED PANTHER PTHR10177: CYCLINE
Rmd1p	SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR16255:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16255: UNCHARACTERIZED Pfam PF02582: DUF155
Pcl2p	Pfam PF00134: Cyclin_N SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type
Clb3p	Gene3D G3DSA:1.10.472.10: no description Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE
Pcl9p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Pfam PF00134: Cyclin_N Gene3D G3DSA:1.10.472.10: no description	PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED
Clb1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Clb6p	Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Brf1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PRINTS PR00685: TIFACTORIIB Gene3D G3DSA:2.20.25.10: no description Gene3D G3DSA:1.20.5.650: no description Pfam PF00382: TFIIB Pfam PF07741: BRF1 Pfam PF08271: TF_Zn_Ribbon PANTHER PTHR11618:SF4: TRANSCRIPTION FACTOR IIIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED SUPERFAMILY SSF57783: Zinc beta-ribbon
Pcl5p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF08613: Cyclin
Ctk2p	PANTHER PTHR10026: CYCLIN Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N	PANTHER PTHR10026:SF4: GB DEF: CTD KINASE BETA SUBUNIT (CTD KINASE 38 KDA SUBUNIT) (CTDK-I BETA SUBUNIT)
Clb4p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N	PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE Pfam PF02984: Cyclin_C PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Bur2p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	none
Cln1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description Pfam PF00134: Cyclin_N	PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN PANTHER PTHR10177: CYCLINE
Pcl1p	Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type PANTHER PTHR10177:SF85: SUBFAMILY NOT NAMED PANTHER PTHR10177: CYCLINE
Cln2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Pfam PF00134: Cyclin_N Gene3D G3DSA:1.10.472.10: no description	PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types
Ccl1p	SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N PANTHER PTHR10026: CYCLIN Gene3D G3DSA:1.10.472.10: no description	PANTHER PTHR10026:SF8: CYCLIN H TIGRFAMs TIGR00569: ccl1: cyclin ccl1
Sua7p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	Gene3D G3DSA:2.20.25.10: no description SUPERFAMILY SSF57783: Zinc beta-ribbon PRINTS PR00685: TIFACTORIIB PANTHER PTHR11618:SF13: TRANSCRIPTION INITIATION FACTOR IIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED Pfam PF00382: TFIIB Pfam PF08271: TF_Zn_Ribbon
Clb2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF02984: Cyclin_C PIR superfamily PIRSF001771: Cyclin, A/B/D/E types PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE
Clb5p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description Pfam PF00134: Cyclin_N SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF02984: Cyclin_C

Unique domains/motifs

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This table lists domains/motifs that are unique to Ssn8p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ssn8p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Ssn8p
Database source	Accession number	Description
PIR superfamily	PIRSF028758	Cyclin, C/H/G types
PANTHER	PTHR10026:SF47	RNA POLYMERASE II HOLOENZYME CYCLIN-LIKE SUBUNIT

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ssn8p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ssn8p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Ssn8p .