HDA1/YNL021W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Hda1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Hda1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hda1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Hda1p
Protein	Motifs in common with Hda1p	Other motifs in this protein (but not in Hda1p )
Hos2p	SUPERFAMILY SSF52768: Arginase/deacetylase PRINTS PR01270: HDASUPER Gene3D G3DSA:3.40.800.20: no description PANTHER PTHR10625: HISTONE DEACETYLASE Pfam PF00850: Hist_deacetyl	PIR superfamily PIRSF037913: Histone deacetylase class I, eukaryotic type PRINTS PR01271: HISDACETLASE PANTHER PTHR10625:SF64: HISTONE DEACETYLASE HOS2
Rpd3p	SUPERFAMILY SSF52768: Arginase/deacetylase Pfam PF00850: Hist_deacetyl Gene3D G3DSA:3.40.800.20: no description PRINTS PR01270: HDASUPER PANTHER PTHR10625: HISTONE DEACETYLASE	PIR superfamily PIRSF037913: Histone deacetylase class I, eukaryotic type PRINTS PR01271: HISDACETLASE PANTHER PTHR10625:SF65: HISTONE DEACETYLASE RPD3
Car1p	SUPERFAMILY SSF52768: Arginase/deacetylase	TIGRFAMs TIGR01229: rocF_arginase: arginase Gene3D G3DSA:3.40.800.10: no description PANTHER PTHR11358:SF2: ARGINASE PANTHER PTHR11358: ARGINASE/AGMATINASE PRINTS PR00116: ARGINASE Pfam PF00491: Arginase
Hos3p	Gene3D G3DSA:3.40.800.20: no description Pfam PF00850: Hist_deacetyl PRINTS PR01270: HDASUPER PANTHER PTHR10625: HISTONE DEACETYLASE SUPERFAMILY SSF52768: Arginase/deacetylase	PANTHER PTHR10625:SF15: HISTONE DEACETYLASE HOS3
Hos1p	Pfam PF00850: Hist_deacetyl PANTHER PTHR10625: HISTONE DEACETYLASE Gene3D G3DSA:3.40.800.20: no description SUPERFAMILY SSF52768: Arginase/deacetylase PRINTS PR01270: HDASUPER	PANTHER PTHR10625:SF11: HISTONE DEACETYLASE HOS1

Unique domains/motifs

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This table lists domains/motifs that are unique to Hda1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hda1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Hda1p
Database source	Accession number	Description
PIR superfamily	PIRSF037919	Histone deacetylase class II, yeast type
PANTHER	PTHR10625:SF22	HISTONE DEACETYLASE
Pfam	PF09757	Arb2

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Hda1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Hda1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Hda1p .