YKU70/YMR284W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Yku70p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Yku70p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yku70p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Yku70p
Protein	Motifs in common with Yku70p	Other motifs in this protein (but not in Yku70p )
Yhr035wp	SUPERFAMILY SSF53300: vWA-like Gene3D G3DSA:3.40.50.410: no description	SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24 Pfam PF04811: Sec23_trunk PANTHER PTHR11141: PROTEIN TRANSPORT PROTEIN SEC23 Gene3D G3DSA:3.40.20.10: no description
Sfb3p	SUPERFAMILY SSF53300: vWA-like Gene3D G3DSA:3.40.50.410: no description	SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24 SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24 SUPERFAMILY SSF81811: Helical domain of Sec23/24 Gene3D G3DSA:2.60.40.1670: no description Gene3D G3DSA:3.40.20.10: no description PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13803: SEC24-RELATED PROTEIN Pfam PF04811: Sec23_trunk Pfam PF04815: Sec23_helical Pfam PF08033: Sec23_BS Pfam PF04810: zf-Sec23_Sec24 Pfam PF00626: Gelsolin
Rpn10p	SUPERFAMILY SSF53300: vWA-like Gene3D G3DSA:3.40.50.410: no description	PANTHER PTHR10223:SF0: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 PANTHER PTHR10223: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 Pfam PF13519: VWA_2
Sec24p	SUPERFAMILY SSF53300: vWA-like Gene3D G3DSA:3.40.50.410: no description	PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13803: SEC24-RELATED PROTEIN Pfam PF04811: Sec23_trunk Pfam PF04815: Sec23_helical Pfam PF04810: zf-Sec23_Sec24 Pfam PF08033: Sec23_BS Pfam PF00626: Gelsolin SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24 SUPERFAMILY SSF81811: Helical domain of Sec23/24 SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24 Gene3D G3DSA:3.40.20.10: no description
Ssl1p	SUPERFAMILY SSF53300: vWA-like	SMART SM00327: von Willebrand factor (vWF) type A domain SMART SM01047: TFIIH C1-like domain PANTHER PTHR12695:SF2: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 PANTHER PTHR12695: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 TIGRFAMs TIGR00622: ssl1: transcription factor ssl1 Pfam PF04056: Ssl1 Pfam PF07975: C1_4 PIR superfamily PIRSF015919: TFIIH basal transcription factor complex, SSL1 subunit SUPERFAMILY SSF57889: Cysteine-rich domain Gene3D G3DSA:3.10.370.10: no description
Mdn1p	SUPERFAMILY SSF53300: vWA-like	SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00382: ATPases associated with a variety of cellula PIR superfamily PIRSF010340: Midasin PANTHER PTHR22908:SF14: MIDASIN (MIDAS-CONTAINING PROTEIN) PANTHER PTHR22908: MIDASIN-RELATED Pfam PF07728: AAA_5 Gene3D G3DSA:3.40.50.300: no description
Yku80p	Gene3D G3DSA:3.40.50.410: no description Gene3D G3DSA:2.40.290.10: no description SMART SM00559: Ku70 and Ku80 are 70kDa and 80kDa subunits o SUPERFAMILY SSF100939: SPOC domain-like SUPERFAMILY SSF53300: vWA-like PANTHER PTHR12604: KU AUTOANTIGEN DNA HELICASE Pfam PF03731: Ku_N Pfam PF02735: Ku Pfam PF03730: Ku_C	PANTHER PTHR12604:SF3: KU P80 DNA HELICASE
Sfb2p	Gene3D G3DSA:3.40.50.410: no description SUPERFAMILY SSF53300: vWA-like	Pfam PF04811: Sec23_trunk Pfam PF04815: Sec23_helical Pfam PF08033: Sec23_BS Pfam PF04810: zf-Sec23_Sec24 Pfam PF00626: Gelsolin Gene3D G3DSA:2.60.40.1670: no description Gene3D G3DSA:3.40.20.10: no description PANTHER PTHR13803:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13803: SEC24-RELATED PROTEIN SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24 SUPERFAMILY SSF81811: Helical domain of Sec23/24 SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24
Sec23p	Gene3D G3DSA:3.40.50.410: no description SUPERFAMILY SSF53300: vWA-like	Gene3D G3DSA:2.60.40.1670: no description Gene3D G3DSA:3.40.20.10: no description PANTHER PTHR11141: PROTEIN TRANSPORT PROTEIN SEC23 SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 SUPERFAMILY SSF82754: C-terminal, gelsolin-like domain of Sec23/24 SUPERFAMILY SSF81811: Helical domain of Sec23/24 SUPERFAMILY SSF82919: Zn-finger domain of Sec23/24 Pfam PF04811: Sec23_trunk Pfam PF04815: Sec23_helical Pfam PF08033: Sec23_BS Pfam PF04810: zf-Sec23_Sec24 Pfam PF00626: Gelsolin

Unique domains/motifs

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This table lists domains/motifs that are unique to Yku70p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yku70p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Yku70p
Database source	Accession number	Description
Gene3D	G3DSA:1.10.1600.10	no description
PIR superfamily	PIRSF003033	Ku DNA-binding complex, Ku70 subunit
PANTHER	PTHR12604:SF2	KU P70 DNA HELICASE

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Yku70p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Yku70p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Yku70p .