RNT1/YMR239C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rnt1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rnt1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rnt1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rnt1p
Protein	Motifs in common with Rnt1p	Other motifs in this protein (but not in Rnt1p )
Mrps5p	Gene3D G3DSA:3.30.160.20: no description SUPERFAMILY SSF54768: dsRNA-binding domain-like	Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR13718:SF2: 30S RIBOSOMAL PROTEIN S5 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like
Rad59p	SUPERFAMILY SSF54768: dsRNA-binding domain-like	PIR superfamily PIRSF022936: DNA repair protein RAD59, fungal type PANTHER PTHR12132:SF2: GB DEF: DNA REPAIR PROTEIN RAD59 PANTHER PTHR12132: DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59 Pfam PF04098: Rad52_Rad22
Rps2p	SUPERFAMILY SSF54768: dsRNA-binding domain-like Gene3D G3DSA:3.30.160.20: no description	TIGRFAMs TIGR01020: rpsE_arch: ribosomal protein S5 SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR13718:SF4: 40S RIBOSOMAL PROTEIN S2 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT
Mrf1p	Gene3D G3DSA:3.30.160.20: no description	PANTHER PTHR11075:SF8: MITOCHONDRIAL PEPTIDE CHAIN RELEASE FACTOR 1 PANTHER PTHR11075: PEPTIDE CHAIN RELEASE FACTOR SUPERFAMILY SSF75620: Release factor SMART SM00937: no description Gene3D G3DSA:1.20.58.410: no description Pfam PF00472: RF-1 Pfam PF03462: PCRF
Ylr281cp	Gene3D G3DSA:3.30.160.20: no description	PANTHER PTHR11075:SF17: OS01G0887400 PROTEIN PANTHER PTHR11075: PEPTIDE CHAIN RELEASE FACTOR Pfam PF00472: RF-1
Mrpl15p	Gene3D G3DSA:1.10.1520.10: no description Pfam PF00636: Ribonuclease_3 SMART SM00535: Ribonuclease III family SUPERFAMILY SSF69065: RNase III domain-like	none
Rad52p	SUPERFAMILY SSF54768: dsRNA-binding domain-like	PANTHER PTHR12132:SF1: DNA REPAIR AND RECOMBINATION PROTEIN RAD52 PANTHER PTHR12132: DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59 TIGRFAMs TIGR00607: rad52: recombination protein rad52 Pfam PF04098: Rad52_Rad22
Mrpl3p	SMART SM00535: Ribonuclease III family SMART SM00358: Double-stranded RNA binding motif Pfam PF00636: Ribonuclease_3 Pfam PF00035: dsrm SUPERFAMILY SSF69065: RNase III domain-like SUPERFAMILY SSF54768: dsRNA-binding domain-like Gene3D G3DSA:1.10.1520.10: no description Gene3D G3DSA:3.30.160.20: no description PANTHER PTHR11207: RIBONUCLEASE III	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Rnt1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rnt1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rnt1p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rnt1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rnt1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rnt1p .