RNA1/YMR235C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rna1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rna1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rna1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rna1p
Protein	Motifs in common with Rna1p	Other motifs in this protein (but not in Rna1p )
Ccr4p	Gene3D G3DSA:3.80.10.10: no description	Pfam PF03372: Exo_endo_phos Pfam PF12799: LRR_4 PANTHER PTHR12121:SF13: CARBON CATABOLITE REPRESSOR PROTEIN 4 PANTHER PTHR12121: CARBON CATABOLITE REPRESSOR PROTEIN 4 SUPERFAMILY SSF56219: DNase I-like SUPERFAMILY SSF52058: L domain-like Gene3D G3DSA:3.60.10.10: no description SMART SM00369: Leucine-rich repeats, typical (most populate
Amn1p	Gene3D G3DSA:3.80.10.10: no description SUPERFAMILY SSF52047: RNI-like	PANTHER PTHR23125:SF9: GB DEF: HYPOTHETICAL 62.7 KDA PROTEIN IN CNS1-CDC28 INTERGENIC REGION PANTHER PTHR23125: F-BOX/LEUCINE RICH REPEAT PROTEIN SMART SM00367: Leucine-rich repeat - CC (cysteine-containin
Ydr131cp	Gene3D G3DSA:3.80.10.10: no description SUPERFAMILY SSF52047: RNI-like	none
Ydr306cp	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	none
Pac2p	Pfam PF13516: LRR_6 SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	PANTHER PTHR15140:SF6: SUBFAMILY NOT NAMED PANTHER PTHR15140: TUBULIN-SPECIFIC CHAPERONE E Pfam PF01302: CAP_GLY Pfam PF00560: LRR_1 SUPERFAMILY SSF74924: Cap-Gly domain SUPERFAMILY SSF54236: Ubiquitin-like SMART SM01052: no description Gene3D G3DSA:2.30.30.190: no description
Cyr1p	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	SUPERFAMILY SSF81606: PP2C-like SUPERFAMILY SSF55073: Nucleotide cyclase SUPERFAMILY SSF52058: L domain-like SMART SM00789: Adenylate cyclase G-alpha binding doma SMART SM00314: Ras association (RalGDS/AF-6) domain SMART SM00332: Serine/threonine phosphatases, family SMART SM00044: Adenylyl- / guanylyl cyclase, catalyti PANTHER PTHR23155:SF19: ADENYLATE CYCLASE PANTHER PTHR23155: LEUCINE-RICH REPEAT-CONTAINING PROTEIN Gene3D G3DSA:3.60.40.10: no description Gene3D G3DSA:3.30.70.1230: no description Pfam PF00481: PP2C Pfam PF12799: LRR_4 Pfam PF13855: LRR_8 Pfam PF00211: Guanylate_cyc Pfam PF00560: LRR_1 Pfam PF08509: Ad_cyc_g-alpha Pfam PF00788: RA
Mhp1p	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	none
Rad7p	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	PANTHER PTHR23125:SF43: RAD7 PANTHER PTHR23125: F-BOX/LEUCINE RICH REPEAT PROTEIN
Grr1p	Gene3D G3DSA:3.80.10.10: no description SUPERFAMILY SSF52047: RNI-like	SMART SM00256: A Receptor for Ubiquitination Targets SMART SM00367: Leucine-rich repeat - CC (cysteine-containin PANTHER PTHR23125:SF63: GB DEF: UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1 PANTHER PTHR23125: F-BOX/LEUCINE RICH REPEAT PROTEIN
Sds22p	Gene3D G3DSA:3.80.10.10: no description	SMART SM00365: Leucine-rich repeat, SDS22-like subfamily SMART SM00369: Leucine-rich repeats, typical (most populate PANTHER PTHR10588: FAMILY NOT NAMED Pfam PF12799: LRR_4 Pfam PF13855: LRR_8 SUPERFAMILY SSF52058: L domain-like
Ylr352wp	Gene3D G3DSA:3.80.10.10: no description SUPERFAMILY SSF52047: RNI-like	PANTHER PTHR23125:SF188: SUBFAMILY NOT NAMED PANTHER PTHR23125: F-BOX/LEUCINE RICH REPEAT PROTEIN
Ctf13p	Gene3D G3DSA:3.80.10.10: no description	none
Roy1p	Gene3D G3DSA:3.80.10.10: no description	none
Dia2p	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	PANTHER PTHR22904:SF50: PREDICTED: SIMILAR TO TTC9C PROTEIN PANTHER PTHR22904: TPR REPEAT CONTAINING PROTEIN Pfam PF00646: F-box SUPERFAMILY SSF48452: TPR-like Gene3D G3DSA:1.25.40.10: no description SMART SM00256: A Receptor for Ubiquitination Targets SMART SM00367: Leucine-rich repeat - CC (cysteine-containin
Her1p	SUPERFAMILY SSF52047: RNI-like Gene3D G3DSA:3.80.10.10: no description	none
Sog2p	Gene3D G3DSA:3.80.10.10: no description	SUPERFAMILY SSF52058: L domain-like SMART SM00369: Leucine-rich repeats, typical (most populate Pfam PF10428: SOG2 Pfam PF13855: LRR_8 PANTHER PTHR23155:SF264: PREDICTED PROTEIN PANTHER PTHR23155: LEUCINE-RICH REPEAT-CONTAINING PROTEIN
Nud1p	Gene3D G3DSA:3.80.10.10: no description	PANTHER PTHR10588:SF101: SUBFAMILY NOT NAMED PANTHER PTHR10588: FAMILY NOT NAMED SUPERFAMILY SSF52058: L domain-like
Gip3p	Gene3D G3DSA:3.80.10.10: no description SUPERFAMILY SSF52047: RNI-like	none
Mex67p	Gene3D G3DSA:3.80.10.10: no description	PANTHER PTHR10662:SF22: MRNA EXPORT FACTOR MEX67 PANTHER PTHR10662: NUCLEAR RNA EXPORT FACTOR SMART SM00804: C-terminal domain of vertebrate Tap protein Gene3D G3DSA:3.10.450.50: no description Gene3D G3DSA:1.10.8.10: no description SUPERFAMILY SSF54427: NTF2-like SUPERFAMILY SSF52058: L domain-like SUPERFAMILY SSF46934: UBA-like Pfam PF03943: TAP_C
Lea1p	Gene3D G3DSA:3.80.10.10: no description	SUPERFAMILY SSF52058: L domain-like SMART SM00446: occurring C-terminal to leucine-rich repeats PANTHER PTHR10552: U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A

Unique domains/motifs

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This table lists domains/motifs that are unique to Rna1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rna1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rna1p
Database source	Accession number	Description
PANTHER	PTHR25480	FAMILY NOT NAMED
PANTHER	PTHR25480:SF105	NOVEL PROTEIN (FRAGMENT)
SMART	SM00368	Leucine rich repeat, ribonuclease inhibitor

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rna1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rna1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rna1p .