RPS10B/YMR230W Domains/Motifs and Signal Peptides 
To directly search external databases for Rps10bp domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Rps10bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rps10bp domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Rps10bp | ||
|---|---|---|
| Protein | Motifs in common with Rps10bp | Other motifs in this protein (but not in Rps10bp ) |
| Map2p | Gene3D G3DSA:1.10.10.10: no description |
PRINTS PR00599: MAPEPTIDASE TIGRFAMs TIGR00501: met_pdase_II: methionine aminopeptidase, type II Gene3D G3DSA:3.90.230.10: no description PANTHER PTHR10804:SF9: METHIONINE AMINOPEPTIDASE 2 PANTHER PTHR10804: PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) Pfam PF00557: Peptidase_M24 SUPERFAMILY SSF55920: Creatinase/aminopeptidase SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Sro9p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR22792:SF17: LA-RELATED PROTEIN 5 (LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 5) SOURCE:UNIPR PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED Pfam PF05383: La SMART SM00715: Domain in the RNA-binding Lupus La protein; SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Hcm1p | Gene3D G3DSA:1.10.10.10: no description |
PRINTS PR00053: FORKHEAD SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Pfam PF00250: Fork_head PANTHER PTHR11829: FAMILY NOT NAMED SMART SM00339: FORKHEAD |
| Lhp1p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF05383: La Pfam PF00076: RRM_1 PANTHER PTHR22792:SF2: LUPUS LA PROTEIN (LA RIBONUCLEOPROTEIN) PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:3.30.70.330: no description PRINTS PR00302: LUPUSLA SMART SM00715: Domain in the RNA-binding Lupus La protein; |
| Rpn6p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00753: PCI/PINT associated module SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI Pfam PF13429: TPR_15 Gene3D G3DSA:1.25.40.10: no description SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR10678:SF2: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11 (26S PROTEASOME REGULATORY SUBUNIT S9) PANTHER PTHR10678: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| Cdc53p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00182: Cullin SMART SM00884: Cullin protein neddylation domain Gene3D G3DSA:1.20.1310.10: no description Gene3D G3DSA:4.10.1030.10: no description SUPERFAMILY SSF74788: Cullin repeat-like SUPERFAMILY SSF75632: Cullin homology domain SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR11932:SF15: GB DEF: CELL DIVISION CONTROL PROTEIN 53 (CULLIN A) PANTHER PTHR11932: CULLIN Pfam PF00888: Cullin Pfam PF10557: Cullin_Nedd8 |
| Rpn5p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI PANTHER PTHR10855:SF1: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 PANTHER PTHR10855: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| Mgt1p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF01035: DNA_binding_1 Pfam PF02870: Methyltransf_1N TIGRFAMs TIGR00589: ogt: methylated-DNA-[protein]-cysteine S-methyltra PANTHER PTHR10815:SF0: METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE PANTHER PTHR10815: METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE SUPERFAMILY SSF46767: Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| Rpn9p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR10539: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI |
| Slf1p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR22792:SF18: PRION-LIKE-(Q/N-RICH)-DOMAIN-BEARING PROTEIN PROTEIN 64, ISOFORM A PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED Pfam PF05383: La SMART SM00715: Domain in the RNA-binding Lupus La protein; SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Rpn3p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Pfam PF08375: Rpn3_C Pfam PF01399: PCI PANTHER PTHR10758:SF2: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 PANTHER PTHR10758: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 SMART SM00753: PCI/PINT associated module SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a |
| Rsc8p | Gene3D G3DSA:1.10.10.10: no description |
Gene3D G3DSA:1.10.10.60: no description Pfam PF04433: SWIRM Pfam PF00569: ZZ Pfam PF00249: Myb_DNA-binding PANTHER PTHR12802:SF6: CHROMATIN STRUCTURE REMODELING COMPLEX PROTEIN PANTHER PTHR12802: SWI/SNF COMPLEX-RELATED SMART SM00291: Zinc-binding domain, present in Dystrophin, SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin SUPERFAMILY SSF46689: Homeodomain-like |
| Hsf1p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00415: heat shock factor SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PRINTS PR00056: HSFDOMAIN Pfam PF00447: HSF_DNA-bind PANTHER PTHR10015:SF29: SUBFAMILY NOT NAMED PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR |
| Cul3p | Gene3D G3DSA:1.10.10.10: no description |
Gene3D G3DSA:1.20.1310.10: no description Gene3D G3DSA:4.10.1030.10: no description PANTHER PTHR11932:SF14: GB DEF: CULLIN B (CULLIN 3) PANTHER PTHR11932: CULLIN SUPERFAMILY SSF75632: Cullin homology domain SUPERFAMILY SSF74788: Cullin repeat-like SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Pfam PF00888: Cullin Pfam PF10557: Cullin_Nedd8 SMART SM00182: Cullin SMART SM00884: Cullin protein neddylation domain |
| Tfg2p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF02270: TFIIF_beta PANTHER PTHR10445:SF0: GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 PANTHER PTHR10445: GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 SUPERFAMILY SSF50916: Rap30/74 interaction domains SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Rom1p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00325: Guanine nucleotide exchange factor for Rho/R SMART SM00036: Domain found in NIK1-like kinases, mouse cit Pfam PF00780: CNH Pfam PF00621: RhoGEF Pfam PF00610: DEP PANTHER PTHR22825: RHO GUANINE EXCHANGE FACTOR Gene3D G3DSA:1.20.900.10: no description SUPERFAMILY SSF48065: DBL homology domain (DH-domain) SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF50729: PH domain-like |
| Mga1p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00415: heat shock factor PANTHER PTHR10015:SF4: PROTEIN MGA1 PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR PRINTS PR00056: HSFDOMAIN SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Pfam PF00447: HSF_DNA-bind |
| Spo11p | Gene3D G3DSA:1.10.10.10: no description |
Gene3D G3DSA:3.40.1360.10: no description PRINTS PR01550: TOP6AFAMILY SUPERFAMILY SSF56726: DNA topoisomerase IV, alpha subunit PANTHER PTHR10848: MEIOTIC RECOMBINATION PROTEIN SPO11 Pfam PF04406: TP6A_N |
| Skn7p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF00447: HSF_DNA-bind Pfam PF00072: Response_reg Gene3D G3DSA:3.40.50.2300: no description SMART SM00415: heat shock factor SMART SM00448: cheY-homologous receiver domain SUPERFAMILY SSF52172: CheY-like SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PRINTS PR00056: HSFDOMAIN PIR superfamily PIRSF002595: Response regulator, SKN7 type PANTHER PTHR10015:SF6: TRANSCRIPTION FACTOR SKN7 PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR |
| Fkh1p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF49879: SMAD/FHA domain PRINTS PR00053: FORKHEAD PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED Gene3D G3DSA:2.60.200.20: no description Pfam PF00250: Fork_head Pfam PF00498: FHA SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD |
| Rtt101p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF00888: Cullin Pfam PF10557: Cullin_Nedd8 SMART SM00884: Cullin protein neddylation domain PANTHER PTHR11932:SF42: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR11932: CULLIN SUPERFAMILY SSF75632: Cullin homology domain |
| Swi3p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF04433: SWIRM Pfam PF00249: Myb_DNA-binding SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like PANTHER PTHR12802:SF5: SWI/SNF COMPLEX COMPONENT SWI3 PANTHER PTHR12802: SWI/SNF COMPLEX-RELATED |
| Cdc6p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF13401: AAA_22 Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR10763:SF7: CELL DIVISION CONTROL PROTEIN 6 PANTHER PTHR10763: CELL DIVISION CONTROL PROTEIN 6-RELATED SMART SM00382: ATPases associated with a variety of cellula PIR superfamily PIRSF001767: Cell division control protein Cdc6 |
| Vps25p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR13149:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13149: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 Pfam PF05871: ESCRT-II Gene3D G3DSA:1.10.10.570: no description SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Iml1p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF12257: DUF3608 Pfam PF00610: DEP SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple PANTHER PTHR13179:SF8: SUBFAMILY NOT NAMED PANTHER PTHR13179: DEP DOMAIN CONTAINING PROTEIN 5 |
| Hms2p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR10015:SF30: UNCHARACTERIZED PROTEIN YJR147W PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR SMART SM00415: heat shock factor Pfam PF00447: HSF_DNA-bind PRINTS PR00056: HSFDOMAIN |
| Apc2p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR11932:SF4: ANAPHASE-PROMOTING COMPLEX SUBUNIT RELATED PANTHER PTHR11932: CULLIN Gene3D G3DSA:4.10.1030.10: no description Pfam PF00888: Cullin Pfam PF08672: APC2 SMART SM01013: Anaphase promoting complex (APC) subunit SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF75632: Cullin homology domain |
| Rfx1p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF02257: RFX_DNA_binding SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR12619:SF5: RFX TRANSCRIPTION FACTOR PANTHER PTHR12619: RFX TRANSCRIPTION FACTOR FAMILY |
| Rom2p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF48065: DBL homology domain (DH-domain) SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF50729: PH domain-like SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00325: Guanine nucleotide exchange factor for Rho/R SMART SM00036: Domain found in NIK1-like kinases, mouse cit Gene3D G3DSA:1.20.900.10: no description PANTHER PTHR22825: RHO GUANINE EXCHANGE FACTOR Pfam PF00780: CNH Pfam PF00621: RhoGEF Pfam PF00610: DEP |
| Vps36p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00547: Zinc finger domain Pfam PF04157: EAP30 Pfam PF11605: Vps36_ESCRT-II PANTHER PTHR13128:SF3: GB DEF: VPS36P PANTHER PTHR13128: FAMILY NOT NAMED SUPERFAMILY SSF50729: PH domain-like SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Sst2p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00315: Regulator of G protein signalling domain Pfam PF00615: RGS Pfam PF00610: DEP PANTHER PTHR10845:SF95: ABR176CP PANTHER PTHR10845: REGULATOR OF G PROTEIN SIGNALING SUPERFAMILY SSF48097: Regulator of G-protein signaling, RGS SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Gene3D G3DSA:1.10.167.10: no description |
| Sgs1p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR13710:SF13: DNA HELICASE HUS2 PANTHER PTHR13710: DNA HELICASE RECQ FAMILY MEMBER TIGRFAMs TIGR00614: recQ_fam: ATP-dependent DNA helicase, RecQ family SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47819: HRDC-like SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00956: no description SMART SM00341: Helicase and RNase D C-terminal Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.150.80: no description Pfam PF11408: Helicase_Sgs1 Pfam PF09382: RQC Pfam PF00270: DEAD Pfam PF00271: Helicase_C |
| Fkh2p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF00250: Fork_head Pfam PF00498: FHA SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF49879: SMAD/FHA domain PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD Gene3D G3DSA:2.60.200.20: no description PRINTS PR00053: FORKHEAD |
| Rio2p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF56112: Protein kinase-like (PK-like) SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Gene3D G3DSA:3.30.200.20: no description Gene3D G3DSA:1.10.510.10: no description Pfam PF01163: RIO1 Pfam PF09202: Rio2_N PANTHER PTHR10593:SF1: SERINE/THREONINE-PROTEIN KINASE RIO2 (RIO KINASE 2) PANTHER PTHR10593: SERINE/THREONINE-PROTEIN KINASE RIO SMART SM00090: RIO-like kinase |
| Rrg9p | Gene3D G3DSA:1.10.10.10: no description |
PANTHER PTHR13475:SF3: NEUGRIN-RELATED PANTHER PTHR13475: NEUGRIN Pfam PF06413: Neugrin |
| Rfa2p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF01336: tRNA_anti Pfam PF08784: RPA_C PIR superfamily PIRSF036949: Replication protein A, RPA32 subunit PANTHER PTHR13989:SF7: SUBFAMILY NOT NAMED PANTHER PTHR13989: REPLICATION PROTEIN A-RELATED SUPERFAMILY SSF50249: Nucleic acid-binding proteins SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Gene3D G3DSA:2.40.50.140: no description |
| Rpc34p | Gene3D G3DSA:1.10.10.10: no description |
Pfam PF05158: RNA_pol_Rpc34 PIR superfamily PIRSF028763: DNA-directed RNA polymerase III, subunits C34/C39 PANTHER PTHR12780:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12780: RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED |
| Sfl1p | Gene3D G3DSA:1.10.10.10: no description |
PRINTS PR00056: HSFDOMAIN Pfam PF00447: HSF_DNA-bind PANTHER PTHR10015:SF44: FLOCCULATION SUPPRESSION PROTEIN PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR SMART SM00415: heat shock factor SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
| Rps10ap | Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR12146: 40S RIBOSOMAL PROTEIN S10 Pfam PF03501: S10_plectin |
none |
| Snf8p | Gene3D G3DSA:1.10.10.10: no description |
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PIR superfamily PIRSF017215: ESCRT-2 complex, Vps22p/Eap30 subunit Pfam PF04157: EAP30 PANTHER PTHR12806:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12806: EAP30 SUBUNIT OF ELL COMPLEX |
| Hho1p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00526: Domain in histone families PRINTS PR00624: HISTONEH5 Pfam PF00538: Linker_histone SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain PANTHER PTHR11467: HISTONE H1/H5 |
| Fhl1p | Gene3D G3DSA:1.10.10.10: no description |
SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain SUPERFAMILY SSF49879: SMAD/FHA domain Gene3D G3DSA:2.60.200.20: no description Pfam PF00250: Fork_head Pfam PF00498: FHA PRINTS PR00053: FORKHEAD PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED |
| Rpn7p | Gene3D G3DSA:1.10.10.10: no description |
Gene3D G3DSA:1.25.40.10: no description SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Pfam PF10602: RPN7 Pfam PF01399: PCI SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a PANTHER PTHR14145:SF1: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 PANTHER PTHR14145: 26S PROTESOME SUBUNIT 6 |
This table lists domains/motifs that are unique to Rps10bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rps10bp domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Rps10bp .
