MSS11/YMR164C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Mss11p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Mss11p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mss11p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Mss11p
Protein	Motifs in common with Mss11p	Other motifs in this protein (but not in Mss11p )
Sif2p	Pfam PF08513: LisH SMART SM00667: Lissencephaly type-1-like homology motif	SUPERFAMILY SSF50978: WD40 repeat-like Gene3D G3DSA:2.130.10.10: no description PANTHER PTHR22846:SF1: GB DEF: SIR4-INTERACTING PROTEIN SIF2 PANTHER PTHR22846: WD40 REPEAT PROTEIN Pfam PF00400: WD40 SMART SM00320: WD40 repeats
Taf5p	SMART SM00667: Lissencephaly type-1-like homology motif Pfam PF08513: LisH	PRINTS PR00320: GPROTEINBRPT SUPERFAMILY SSF50978: WD40 repeat-like SMART SM00320: WD40 repeats Pfam PF00400: WD40 Pfam PF04494: TFIID_90kDa PANTHER PTHR19879:SF0: SUBFAMILY NOT NAMED PANTHER PTHR19879: TRANSCRIPTION INITIATION FACTOR TFIID Gene3D G3DSA:2.130.10.10: no description
Flo8p	SMART SM00667: Lissencephaly type-1-like homology motif Pfam PF08513: LisH	none
Ygr117cp	Pfam PF08513: LisH SMART SM00667: Lissencephaly type-1-like homology motif	Gene3D G3DSA:2.130.10.10: no description SUPERFAMILY SSF50978: WD40 repeat-like PIR superfamily PIRSF007778: Uncharacterised conserved protein, UCP007778 type

Unique domains/motifs

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This table lists domains/motifs that are unique to Mss11p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Mss11p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Mss11p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Mss11p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Mss11p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Mss11p .